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ONTOLOGY REPORT - ANNOTATIONS

Term:ribosome biogenesis
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Accession:GO:0042254 term browser browse the term
Definition:A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis.
Synonyms:exact_synonym: ribosome biogenesis and assembly
 alt_id: GO:0007046

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ribosome biogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AATF apoptosis antagonizing transcription factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11071758) Ensembl
MGI		 PMID:11071758 GO_REF:0000107 NCBI chr16:30,728,070...30,838,816
Ensembl chr16:30,728,070...30,838,704 		JBrowse link
G AK6 adenylate kinase 6 involved_in IEA UniProt GO_REF:0000043 NCBI chr 4:65,435,848...65,456,343
Ensembl chr 4:65,434,782...65,456,000 		JBrowse link
G BMS1 BMS1 ribosome biogenesis factor involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr 9:38,459,322...38,503,090
Ensembl chr 9:38,459,237...38,505,560 		JBrowse link
G BOP1 BOP1 ribosomal biogenesis factor involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr 8:138,473,377...138,503,715
Ensembl chr 8:138,473,441...138,503,661 		JBrowse link
G CUL4A cullin 4A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:91,211,238...91,267,236
Ensembl chr 3:91,212,193...91,268,838 		JBrowse link
G CUL4B cullin 4B involved_in ISO (PMID:26711351)
(MGI:6294197|PMID:26711351)		 UniProt PMID:26711351 MGI:6294197
G DDX31 DEAD-box helicase 31 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr12:5,468,127...5,545,610
Ensembl chr12:5,468,412...5,549,120 		JBrowse link
G DHX37 DEAH-box helicase 37 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:120,304,767...120,347,439
Ensembl chr11:120,304,314...120,347,227 		JBrowse link
G EBNA1BP2 EBNA1 binding protein 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr20:89,625,691...89,634,204
Ensembl chr20:89,625,145...89,634,329
Ensembl chr20:89,625,145...89,634,329 		JBrowse link
G EIF6 eukaryotic translation initiation factor 6 involved_in IEA UniProt GO_REF:0000043 NCBI chr 2:56,185,419...56,190,993
Ensembl chr 2:56,184,679...56,191,012 		JBrowse link
G EMG1 EMG1 N1-specific pseudouridine methyltransferase involved_in IEA UniProt GO_REF:0000043 NCBI chr11:7,004,507...7,009,702
Ensembl chr11:7,004,645...7,009,527 		JBrowse link
G FCF1 FCF1 rRNA-processing protein involved_in IEA UniProt GO_REF:0000043 NCBI chr24:51,928,076...51,947,993 JBrowse link
G FTSJ3 FtsJ RNA 2'-O-methyltransferase 3 involved_in IEA UniProt GO_REF:0000043 NCBI chr16:57,462,623...57,469,972
Ensembl chr16:57,462,798...57,469,604 		JBrowse link
G GAR1 GAR1 ribonucleoprotein involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr 7:57,713,245...57,722,831
Ensembl chr 7:57,713,881...57,722,224 		JBrowse link
G GLUL glutamate-ammonia ligase involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:46,988,853...46,998,112
Ensembl chr25:46,989,205...47,000,555 		JBrowse link
G GRWD1 glutamate rich WD repeat containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:41,707,669...41,715,293
Ensembl chr 6:41,707,743...41,714,425 		JBrowse link
G GTPBP10 GTP binding protein 10 involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chr21:58,546,178...58,583,737
Ensembl chr21:58,547,999...58,583,703 		JBrowse link
G GTPBP4 GTP binding protein 4 involved_in IEA UniProt GO_REF:0000043 NCBI chr 9:953,062...981,213
Ensembl chr 9:952,663...981,353 		JBrowse link
G HEATR1 HEAT repeat containing 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr25:73,684,845...73,743,594
Ensembl chr25:73,685,895...73,743,654 		JBrowse link
G IMP3 IMP U3 small nucleolar ribonucleoprotein 3 involved_in IEA UniProt GO_REF:0000043 NCBI chr26:7,793,302...7,794,976
Ensembl chr26:7,793,899...7,794,453 		JBrowse link
G IMP4 IMP U3 small nucleolar ribonucleoprotein 4 involved_in IEA UniProt GO_REF:0000043 NCBI chr10:62,049...66,112
Ensembl chr10:62,177...65,801 		JBrowse link
G KRR1 KRR1 small subunit processome component homolog involved_in IEA UniProt GO_REF:0000043 GO_REF:0000117 NCBI chr11:71,105,372...71,118,039
Ensembl chr11:71,105,645...71,118,040 		JBrowse link
G LOC103219498 RNA 3'-terminal phosphate cyclase-like protein involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr12:74,688,284...74,754,184
Ensembl chr12:74,687,071...74,754,045 		JBrowse link
G LOC103221832 ATP-binding cassette sub-family F member 1 NOT|involved_in ISO (PMID:19570978) UniProt PMID:19570978 NCBI chr17:41,866,152...41,885,673
Ensembl chr17:41,866,062...41,884,972 		JBrowse link
G LOC103224065 ribosome biogenesis protein NSA2 homolog involved_in IEA UniProt GO_REF:0000043 NCBI chr20:12,979,244...12,980,183 JBrowse link
G LOC103229684 ribosome production factor 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr 5:20,408,938...20,410,218 JBrowse link
G LOC103230493 60S ribosomal protein L7a-like involved_in IEA InterPro GO_REF:0000002 NCBI chr25:48,723,513...48,724,384 JBrowse link
G LOC103232211 mRNA turnover protein 4 homolog involved_in IEA UniProt GO_REF:0000043 NCBI chr  X:64,313,899...64,314,849 JBrowse link
G LOC103232226 60S acidic ribosomal protein P0-like involved_in IEA InterPro GO_REF:0000002 NCBI chr  X:65,774,164...65,775,211 JBrowse link
G LOC103233098 ribosome biogenesis protein NSA2 homolog involved_in IEA UniProt GO_REF:0000043 NCBI chr 5:45,756,269...45,757,257 JBrowse link
G LOC103234300 60S ribosomal protein L7a-like involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:21,088,099...21,089,032 JBrowse link
G LOC103237171 mRNA turnover protein 4 homolog involved_in IEA UniProt GO_REF:0000043 NCBI chr 8:91,545,502...91,546,989 JBrowse link
G LOC103238750 60S acidic ribosomal protein P0-like involved_in IEA InterPro GO_REF:0000002 NCBI chr11:71,329,934...71,330,987 JBrowse link
G LOC103238770 ribosomal biogenesis factor-like involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr11:73,726,560...73,726,989 JBrowse link
G LOC103238959 60S ribosomal protein L7a-like involved_in IEA InterPro GO_REF:0000002 NCBI chr11:97,989,976...97,990,924 JBrowse link
G LOC103240161 60S ribosomal protein L7a-like involved_in IEA InterPro GO_REF:0000002 NCBI chr13:22,366,870...22,367,776 JBrowse link
G LOC103244003 60S ribosomal protein L7a-like involved_in IEA InterPro GO_REF:0000002 NCBI chr17:11,249,664...11,250,728 JBrowse link
G LOC103244317 NHP2-like protein 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr23:13,631,584...13,632,034 JBrowse link
G LOC103245456 60S ribosomal protein L7a-like involved_in IEA InterPro GO_REF:0000002 NCBI chr26:17,337,709...17,338,624 JBrowse link
G LOC103248157 rRNA-processing protein FCF1 homolog involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:77,180,429...77,181,144 JBrowse link
G LOC119624351 60S ribosomal protein L7a-like involved_in IEA InterPro GO_REF:0000002
G MPHOSPH10 M-phase phosphoprotein 10 involved_in IEA UniProt GO_REF:0000043 NCBI chr14:36,018,448...36,038,295
Ensembl chr14:36,018,456...36,038,127 		JBrowse link
G MRM2 mitochondrial rRNA methyltransferase 2 involved_in IEA UniProt GO_REF:0000117 NCBI chr28:19,336,935...19,355,221 JBrowse link
G MRTO4 MRT4 homolog, ribosome maturation factor involved_in IEA UniProt GO_REF:0000043 NCBI chr20:113,299,433...113,306,729
Ensembl chr20:113,299,708...113,306,704 		JBrowse link
G MTG2 mitochondrial ribosome associated GTPase 2 involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chr 2:2,038,420...2,057,497
Ensembl chr 2:2,036,043...2,045,369 		JBrowse link
G NAF1 nuclear assembly factor 1 ribonucleoprotein involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:109,578,476...109,617,114
Ensembl chr 7:109,576,073...109,617,122 		JBrowse link
G NHP2 NHP2 ribonucleoprotein involved_in IEA UniProt GO_REF:0000043 NCBI chr23:79,842,690...79,847,138
Ensembl chr23:79,842,948...79,846,984 		JBrowse link
G NIP7 nucleolar pre-rRNA processing protein NIP7 involved_in IEA UniProt GO_REF:0000043 NCBI chr 5:58,064,294...58,067,645
Ensembl chr 5:58,064,954...58,067,340 		JBrowse link
G NOC4L nucleolar complex associated 4 homolog involved_in IEA InterPro GO_REF:0000002 NCBI chr11:127,525,569...127,531,834
Ensembl chr11:127,525,579...127,532,804 		JBrowse link
G NOP10 NOP10 ribonucleoprotein involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr26:48,563,535...48,566,409
Ensembl chr26:48,563,517...48,566,745 		JBrowse link
G NOP14 NOP14 nucleolar protein involved_in IEA UniProt GO_REF:0000043 NCBI chr27:45,765,452...45,803,010
Ensembl chr27:45,765,603...45,806,730 		JBrowse link
G NOP2 NOP2 nucleolar protein involved_in IEA UniProt GO_REF:0000043 NCBI chr11:6,590,518...6,601,981
Ensembl chr11:6,590,642...6,601,552 		JBrowse link
G NOP53 NOP53 ribosome biogenesis factor involved_in IEA UniProt GO_REF:0000043 NCBI chr 6:41,058,199...41,070,220
Ensembl chr 6:41,057,906...41,071,202 		JBrowse link
G NSA2 NSA2 ribosome biogenesis factor involved_in IEA UniProt GO_REF:0000043 NCBI chr 4:69,114,609...69,125,319
Ensembl chr 4:69,116,582...69,123,948 		JBrowse link
G NVL nuclear VCP like involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr25:5,455,812...5,555,666
Ensembl chr25:5,455,646...5,556,770 		JBrowse link
G PES1 pescadillo ribosomal biogenesis factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12237316) InterPro
MGI
UniProt		 PMID:12237316 GO_REF:0000002 GO_REF:0000043 NCBI chr19:13,453,184...13,469,115
Ensembl chr19:13,453,160...13,469,012 		JBrowse link
G PWP2 PWP2 small subunit processome component involved_in IEA UniProt GO_REF:0000117 NCBI chr 2:87,858,003...87,881,072
Ensembl chr 2:87,858,029...87,881,102 		JBrowse link
G RBIS ribosomal biogenesis factor involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 8:80,587,867...80,593,722 JBrowse link
G RIOK1 RIO kinase 1 involved_in IEA UniProt GO_REF:0000043 NCBI chr17:64,776,613...64,804,989
Ensembl chr17:64,776,629...64,805,280 		JBrowse link
G RIOK2 RIO kinase 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr 4:90,992,940...91,010,016
Ensembl chr 4:90,996,371...91,010,036 		JBrowse link
G RIOK3 RIO kinase 3 involved_in IEA UniProt GO_REF:0000043 NCBI chr18:57,048,500...57,078,770
Ensembl chr18:57,048,447...57,078,312 		JBrowse link
G RPF1 ribosome production factor 1 homolog involved_in IEA UniProt GO_REF:0000043 NCBI chr20:48,855,166...48,877,132 JBrowse link
G RPL7A ribosomal protein L7a involved_in IEA InterPro GO_REF:0000002 NCBI chr29:4,165,087...4,165,974 JBrowse link
G RPLP0 ribosomal protein lateral stalk subunit P0 involved_in IEA InterPro GO_REF:0000002 NCBI chr11:115,547,430...115,552,242
Ensembl chr11:115,547,427...115,550,209 		JBrowse link
G RPS28 ribosomal protein S28 involved_in ISO (PMID:24942156) UniProt PMID:24942156 NCBI chr 6:7,684,720...7,685,597 JBrowse link
G RRN3 RRN3 homolog, RNA polymerase I transcription factor acts_upstream_of_or_within ISO (PMID:15989966) MGI PMID:15989966 NCBI chr 5:14,235,368...14,271,790
Ensembl chr 5:14,235,414...14,272,020 		JBrowse link
G RRP36 ribosomal RNA processing 36 involved_in IEA UniProt GO_REF:0000043 NCBI chr17:29,130,607...29,138,585
Ensembl chr17:29,130,981...29,138,395 		JBrowse link
G RRP7A ribosomal RNA processing 7 homolog A involved_in ISO (PMID:33199730) UniProt PMID:33199730
G RRS1 ribosome biogenesis regulator 1 homolog involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr 8:62,297,483...62,299,194
Ensembl chr 8:62,297,608...62,298,705 		JBrowse link
G SBDS SBDS ribosome maturation factor involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr28:2,527,395...2,535,152
Ensembl chr28:2,527,020...2,535,147 		JBrowse link
G SDE2 SDE2 telomere maintenance homolog involved_in IEA UniProt GO_REF:0000043 NCBI chr25:3,779,561...3,793,496
Ensembl chr25:3,779,560...3,795,893 		JBrowse link
G SNU13 small nuclear ribonucleoprotein 13 involved_in IEA InterPro GO_REF:0000002 NCBI chr19:24,209,356...24,223,431
Ensembl chr19:24,206,653...24,216,686 		JBrowse link
G SURF6 surfeit 6 acts_upstream_of_or_within ISO (PMID:16855206) MGI PMID:16855206 NCBI chr12:4,803,231...4,804,973 JBrowse link
G TSR1 TSR1 ribosome maturation factor involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr16:1,955,566...1,970,424
Ensembl chr16:1,955,317...1,969,374 		JBrowse link
G TSR3 TSR3 ribosome maturation factor involved_in IEA UniProt GO_REF:0000043 NCBI chr 5:1,237,625...1,240,287
Ensembl chr 5:1,237,821...1,240,191 		JBrowse link
G URB2 URB2 ribosome biogenesis homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr25:66,893,033...66,926,921
Ensembl chr25:66,893,112...66,929,487 		JBrowse link
G UTP23 UTP23 small subunit processome component involved_in IEA UniProt GO_REF:0000043 NCBI chr 8:111,404,636...111,410,083
Ensembl chr 8:111,404,634...111,413,673 		JBrowse link
G WDR12 WD repeat domain 12 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr10:88,616,540...88,649,743
Ensembl chr10:88,616,797...88,649,418 		JBrowse link
G WDR3 WD repeat domain 3 involved_in IEA UniProt GO_REF:0000117 NCBI chr20:15,773,294...15,803,157
Ensembl chr20:15,772,511...15,799,581 		JBrowse link
G WDR75 WD repeat domain 75 involved_in IEA UniProt GO_REF:0000043 NCBI chr10:74,953,086...74,989,662
Ensembl chr10:74,953,072...74,991,458 		JBrowse link
G XPO1 exportin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:45,428,279...45,487,965
Ensembl chr14:45,432,619...45,488,723 		JBrowse link
G ZNF593 zinc finger protein 593 involved_in IEA UniProt GO_REF:0000043 NCBI chr20:106,596,850...106,597,859
Ensembl chr20:106,596,576...106,597,789 		JBrowse link
G ZNF622 zinc finger protein 622 involved_in IEA UniProt GO_REF:0000043 NCBI chr 4:16,131,215...16,145,763
Ensembl chr 4:16,127,777...16,145,777 		JBrowse link
G ZNF658 zinc finger protein 658 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:105,381,826...105,402,567
Ensembl chr12:105,389,572...105,401,659 		JBrowse link
90S preribosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RPL38 ribosomal protein L38 acts_upstream_of_or_within ISO (PMID:21529712) MGI PMID:21529712 NCBI chr16:47,425,014...47,432,401 JBrowse link
assembly of large subunit precursor of preribosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EIF6 eukaryotic translation initiation factor 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:56,185,419...56,190,993
Ensembl chr 2:56,184,679...56,191,012 		JBrowse link
cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BOP1 BOP1 ribosomal biogenesis factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:138,473,377...138,503,715
Ensembl chr 8:138,473,441...138,503,661 		JBrowse link
G NOL9 nucleolar protein 9 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:125,188,185...125,215,984
Ensembl chr20:125,188,275...125,215,685 		JBrowse link
G NPM1 nucleophosmin 1 ISO RGD PMID:9742256 RGD:11535027 NCBI chr23:73,555,020...73,575,910
Ensembl chr23:73,555,260...73,575,925 		JBrowse link
cytosolic ribosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1QBP complement C1q binding protein involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:4,843,202...4,850,639
Ensembl chr16:4,843,438...4,850,600 		JBrowse link
G DDX3X DEAD-box helicase 3 X-linked involved_in ISO (PMID:22323517) UniProt PMID:22323517 NCBI chr  X:38,513,251...38,539,982
Ensembl chr  Y:689,380...706,092 		JBrowse link
G EFL1 elongation factor like GTPase 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr26:1,134,150...1,270,216
Ensembl chr26:1,134,208...1,270,885 		JBrowse link
G EIF6 eukaryotic translation initiation factor 6 involved_in IEA UniProt
InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 NCBI chr 2:56,185,419...56,190,993
Ensembl chr 2:56,184,679...56,191,012 		JBrowse link
G NSUN4 NOP2/Sun RNA methyltransferase 4 involved_in ISO (MGI:5573024|PMID:24516400) UniProt PMID:24516400 MGI:5573024 NCBI chr20:86,432,047...86,453,481
Ensembl chr20:86,432,414...86,453,157 		JBrowse link
G SBDS SBDS ribosome maturation factor involved_in IEA InterPro GO_REF:0000002 NCBI chr28:2,527,395...2,535,152
Ensembl chr28:2,527,020...2,535,147 		JBrowse link
endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABT1 activator of basal transcription 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:45,617,425...45,619,634
Ensembl chr17:45,616,617...45,619,681 		JBrowse link
G FCF1 FCF1 rRNA-processing protein acts_upstream_of_or_within ISO (PMID:25190460) MGI PMID:25190460 NCBI chr24:51,928,076...51,947,993 JBrowse link
G LOC103219498 RNA 3'-terminal phosphate cyclase-like protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25190460) Ensembl
MGI		 PMID:25190460 GO_REF:0000107 NCBI chr12:74,688,284...74,754,184
Ensembl chr12:74,687,071...74,754,045 		JBrowse link
G NOP9 NOP9 nucleolar protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr24:1,282,877...1,288,265
Ensembl chr24:1,282,873...1,288,148 		JBrowse link
G TBL3 transducin beta like 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:1,867,943...1,874,640
Ensembl chr 5:1,867,917...1,875,236 		JBrowse link
G UTP23 UTP23 small subunit processome component involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25190460) Ensembl
MGI		 PMID:25190460 GO_REF:0000107 NCBI chr 8:111,404,636...111,410,083
Ensembl chr 8:111,404,634...111,413,673 		JBrowse link
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABT1 activator of basal transcription 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:45,617,425...45,619,634
Ensembl chr17:45,616,617...45,619,681 		JBrowse link
G FCF1 FCF1 rRNA-processing protein acts_upstream_of_or_within ISO (PMID:25190460) MGI PMID:25190460 NCBI chr24:51,928,076...51,947,993 JBrowse link
G KRI1 KRI1 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:9,564,977...9,579,267
Ensembl chr 6:9,562,857...9,574,360 		JBrowse link
G LOC103219498 RNA 3'-terminal phosphate cyclase-like protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25190460) Ensembl
MGI		 PMID:25190460 GO_REF:0000107 NCBI chr12:74,688,284...74,754,184
Ensembl chr12:74,687,071...74,754,045 		JBrowse link
G NOP9 NOP9 nucleolar protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr24:1,282,877...1,288,265
Ensembl chr24:1,282,873...1,288,148 		JBrowse link
G RPP40 ribonuclease P/MRP subunit p40 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:67,172,759...67,181,669
Ensembl chr17:67,173,130...67,181,975 		JBrowse link
G RPS21 ribosomal protein S21 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:1,841,865...1,843,332
Ensembl chr 2:1,841,865...1,843,087 		JBrowse link
G RRS1 ribosome biogenesis regulator 1 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:62,297,483...62,299,194
Ensembl chr 8:62,297,608...62,298,705 		JBrowse link
endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMS1 BMS1 ribosome biogenesis factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:38,459,322...38,503,090
Ensembl chr 9:38,459,237...38,505,560 		JBrowse link
G LOC103219498 RNA 3'-terminal phosphate cyclase-like protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:74,688,284...74,754,184
Ensembl chr12:74,687,071...74,754,045 		JBrowse link
G SDE2 SDE2 telomere maintenance homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:3,779,561...3,793,496
Ensembl chr25:3,779,560...3,795,893 		JBrowse link
G TSR1 TSR1 ribosome maturation factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:1,955,566...1,970,424
Ensembl chr16:1,955,317...1,969,374 		JBrowse link
endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RPS21 ribosomal protein S21 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:1,841,865...1,843,332
Ensembl chr 2:1,841,865...1,843,087 		JBrowse link
endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABT1 activator of basal transcription 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:45,617,425...45,619,634
Ensembl chr17:45,616,617...45,619,681 		JBrowse link
G NOP9 NOP9 nucleolar protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr24:1,282,877...1,288,265
Ensembl chr24:1,282,873...1,288,148 		JBrowse link
G TBL3 transducin beta like 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:1,867,943...1,874,640
Ensembl chr 5:1,867,917...1,875,236 		JBrowse link
enzyme-directed rRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DKC1 dyskerin pseudouridine synthase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:129,015,883...129,029,741
Ensembl chr  X:129,016,046...129,030,001 		JBrowse link
G RPUSD1 RNA pseudouridine synthase domain containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:704,649...708,025
Ensembl chr 5:704,519...708,058 		JBrowse link
G RPUSD2 RNA pseudouridine synthase domain containing 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:42,430,914...42,436,137
Ensembl chr26:42,429,263...42,436,090 		JBrowse link
G RPUSD3 RNA pseudouridine synthase D3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr22:45,848,749...45,857,122
Ensembl chr22:45,848,788...45,857,117 		JBrowse link
G RPUSD4 RNA pseudouridine synthase D4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:117,313,209...117,338,728
Ensembl chr 1:117,330,040...117,338,682 		JBrowse link
G TSR3 TSR3 ribosome maturation factor involved_in IEA UniProt
Ensembl		 GO_REF:0000104 GO_REF:0000107 NCBI chr 5:1,237,625...1,240,287
Ensembl chr 5:1,237,821...1,240,191 		JBrowse link
exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERI1 exoribonuclease 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:9,936,951...10,055,407
Ensembl chr 8:10,023,909...10,055,405 		JBrowse link
G ERI3 ERI1 exoribonuclease family member 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:88,435,067...88,569,866
Ensembl chr20:88,435,047...88,570,458 		JBrowse link
G EXOSC10 exosome component 10 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr20:120,672,590...120,694,887
Ensembl chr20:120,672,645...120,710,775 		JBrowse link
G EXOSC2 exosome component 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:7,441,812...7,452,979
Ensembl chr12:7,442,791...7,452,964 		JBrowse link
G EXOSC3 exosome component 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:42,798,609...42,819,431
Ensembl chr12:42,799,067...42,803,471 		JBrowse link
G EXOSC7 exosome component 7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr22:6,452,155...6,485,411
Ensembl chr22:6,452,195...6,485,276 		JBrowse link
G EXOSC8 exosome component 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:15,520,122...15,529,101
Ensembl chr 3:15,519,804...15,529,014 		JBrowse link
G EXOSC9 exosome component 9 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:69,077,227...69,092,867
Ensembl chr 7:69,077,164...69,092,810 		JBrowse link
maturation of 5.8S rRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1D C1D nuclear receptor corepressor involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr14:39,019,972...39,043,109
Ensembl chr14:39,019,588...39,044,032 		JBrowse link
G EIF6 eukaryotic translation initiation factor 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:56,185,419...56,190,993
Ensembl chr 2:56,184,679...56,191,012 		JBrowse link
G ERI1 exoribonuclease 1 involved_in ISO (PMID:37352860) UniProt PMID:37352860 NCBI chr 8:9,936,951...10,055,407
Ensembl chr 8:10,023,909...10,055,405 		JBrowse link
G EXOSC10 exosome component 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:120,672,590...120,694,887
Ensembl chr20:120,672,645...120,710,775 		JBrowse link
G EXOSC4 exosome component 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:138,290,581...138,292,621
Ensembl chr 8:138,290,705...138,292,570 		JBrowse link
G LAS1L LAS1 like ribosome biogenesis factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:55,503,201...55,524,995
Ensembl chr  X:55,503,109...55,525,026 		JBrowse link
G LOC103215926 nuclear nucleic acid-binding protein C1D-like involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:51,752,321...51,753,110 JBrowse link
G LOC103224065 ribosome biogenesis protein NSA2 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:12,979,244...12,980,183 JBrowse link
G LOC103229684 ribosome production factor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:20,408,938...20,410,218 JBrowse link
G LOC103233098 ribosome biogenesis protein NSA2 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:45,756,269...45,757,257 JBrowse link
G LOC119625061 M-phase phosphoprotein 6-like involved_in IEA TreeGrafter GO_REF:0000118
G MPHOSPH6 M-phase phosphoprotein 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:67,575,066...67,593,941 JBrowse link
G MTREX Mtr4 exosome RNA helicase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:51,543,976...51,667,458
Ensembl chr 4:51,544,211...51,667,254 		JBrowse link
G NOL9 nucleolar protein 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:125,188,185...125,215,984
Ensembl chr20:125,188,275...125,215,685 		JBrowse link
G NSA2 NSA2 ribosome biogenesis factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:69,114,609...69,125,319
Ensembl chr 4:69,116,582...69,123,948 		JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:43,915,226...44,119,547
Ensembl chr 8:43,914,636...44,119,541 		JBrowse link
G RPF1 ribosome production factor 1 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:48,855,166...48,877,132 JBrowse link
G RRP15 ribosomal RNA processing 15 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr25:11,273,756...11,318,280
Ensembl chr25:11,274,241...11,318,290 		JBrowse link
maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BOP1 BOP1 ribosomal biogenesis factor involved_in IEA UniProt GO_REF:0000104 NCBI chr 8:138,473,377...138,503,715
Ensembl chr 8:138,473,441...138,503,661 		JBrowse link
G FTSJ3 FtsJ RNA 2'-O-methyltransferase 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:57,462,623...57,469,972
Ensembl chr16:57,462,798...57,469,604 		JBrowse link
G PES1 pescadillo ribosomal biogenesis factor 1 involved_in IEA UniProt
Ensembl		 GO_REF:0000104 GO_REF:0000107 NCBI chr19:13,453,184...13,469,115
Ensembl chr19:13,453,160...13,469,012 		JBrowse link
G URB1 URB1 ribosome biogenesis homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:59,733,260...59,811,990
Ensembl chr 2:59,733,902...59,814,018 		JBrowse link
G WDR12 WD repeat domain 12 involved_in IEA UniProt
Ensembl
TreeGrafter		 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr10:88,616,540...88,649,743
Ensembl chr10:88,616,797...88,649,418 		JBrowse link
maturation of 5S rRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SART1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:8,279,821...8,296,282
Ensembl chr 1:8,275,123...8,296,245 		JBrowse link
maturation of LSU-rRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EIF6 eukaryotic translation initiation factor 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:56,185,419...56,190,993
Ensembl chr 2:56,184,679...56,191,012 		JBrowse link
G LAS1L LAS1 like ribosome biogenesis factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:55,503,201...55,524,995
Ensembl chr  X:55,503,109...55,525,026 		JBrowse link
G LOC103220998 60S ribosomal protein L10a-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:42,342,536...42,346,405 JBrowse link
G LOC103224065 ribosome biogenesis protein NSA2 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:12,979,244...12,980,183 JBrowse link
G LOC103226462 60S ribosomal protein L7a-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr21:44,251,901...44,252,784 JBrowse link
G LOC103229684 ribosome production factor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:20,408,938...20,410,218 JBrowse link
G LOC103230493 60S ribosomal protein L7a-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr25:48,723,513...48,724,384 JBrowse link
G LOC103233098 ribosome biogenesis protein NSA2 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:45,756,269...45,757,257 JBrowse link
G LOC103234300 60S ribosomal protein L7a-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:21,088,099...21,089,032 JBrowse link
G LOC103238959 60S ribosomal protein L7a-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:97,989,976...97,990,924 JBrowse link
G LOC103240161 60S ribosomal protein L7a-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:22,366,870...22,367,776 JBrowse link
G LOC103244003 60S ribosomal protein L7a-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:11,249,664...11,250,728 JBrowse link
G LOC103244317 NHP2-like protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr23:13,631,584...13,632,034 JBrowse link
G LOC103245456 60S ribosomal protein L7a-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:17,337,709...17,338,624 JBrowse link
G LOC119624351 60S ribosomal protein L7a-like involved_in IEA TreeGrafter GO_REF:0000118
G NHP2 NHP2 ribonucleoprotein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr23:79,842,690...79,847,138
Ensembl chr23:79,842,948...79,846,984 		JBrowse link
G NOP2 NOP2 nucleolar protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:6,590,518...6,601,981
Ensembl chr11:6,590,642...6,601,552 		JBrowse link
G NSA2 NSA2 ribosome biogenesis factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:69,114,609...69,125,319
Ensembl chr 4:69,116,582...69,123,948 		JBrowse link
G RPF1 ribosome production factor 1 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:48,855,166...48,877,132 JBrowse link
G RPL10A ribosomal protein L10a involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:36,655,272...36,657,951
Ensembl chr17:36,653,183...36,658,033 		JBrowse link
G RPL7A ribosomal protein L7a involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr29:4,165,087...4,165,974 JBrowse link
G RRP15 ribosomal RNA processing 15 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr25:11,273,756...11,318,280
Ensembl chr25:11,274,241...11,318,290 		JBrowse link
G SNU13 small nuclear ribonucleoprotein 13 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:24,209,356...24,223,431
Ensembl chr19:24,206,653...24,216,686 		JBrowse link
maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BOP1 BOP1 ribosomal biogenesis factor involved_in IEA UniProt
TreeGrafter
Ensembl		 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:138,473,377...138,503,715
Ensembl chr 8:138,473,441...138,503,661 		JBrowse link
G DDX18 DEAD-box helicase 18 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:12,455,877...12,473,670
Ensembl chr10:12,457,543...12,473,655 		JBrowse link
G FTSJ3 FtsJ RNA 2'-O-methyltransferase 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:57,462,623...57,469,972
Ensembl chr16:57,462,798...57,469,604 		JBrowse link
G GTPBP4 GTP binding protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25190460) Ensembl
MGI		 PMID:25190460 GO_REF:0000107 NCBI chr 9:953,062...981,213
Ensembl chr 9:952,663...981,353 		JBrowse link
G LOC103215917 zinc finger HIT domain-containing protein 3-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:51,480,808...51,482,132 JBrowse link
G LOC103217060 zinc finger HIT domain-containing protein 3-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:34,277,451...34,278,372 JBrowse link
G LOC103230449 60S ribosomal protein L35-like involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr25:45,620,698...45,621,164 JBrowse link
G LOC103231744 60S ribosomal protein L7-like involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr  X:25,154,621...25,155,575 JBrowse link
G LOC103236698 60S ribosomal protein L7-like 1 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 7:48,122,343...48,123,350 JBrowse link
G NIFK nucleolar protein interacting with the FHA domain of MKI67 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:8,554,373...8,563,865
Ensembl chr10:8,554,583...8,563,817 		JBrowse link
G PES1 pescadillo ribosomal biogenesis factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25190460) UniProt
MGI
TreeGrafter
Ensembl		 PMID:25190460 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr19:13,453,184...13,469,115
Ensembl chr19:13,453,160...13,469,012 		JBrowse link
G RPL35 ribosomal protein L35 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr12:13,276,525...13,290,721 JBrowse link
G RPL7 ribosomal protein L7 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 8:68,899,626...68,902,757 JBrowse link
G RPL7L1 ribosomal protein L7 like 1 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr17:29,261,400...29,272,240
Ensembl chr17:29,262,846...29,272,245 		JBrowse link
G URB1 URB1 ribosome biogenesis homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:59,733,260...59,811,990
Ensembl chr 2:59,733,902...59,814,018 		JBrowse link
G WDR12 WD repeat domain 12 involved_in IEA UniProt
TreeGrafter
Ensembl		 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr10:88,616,540...88,649,743
Ensembl chr10:88,616,797...88,649,418 		JBrowse link
G ZNHIT3 zinc finger HIT-type containing 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:31,313,087...31,322,303 JBrowse link
G ZNHIT6 zinc finger HIT-type containing 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:47,666,100...47,720,015
Ensembl chr20:47,666,297...47,722,160 		JBrowse link
maturation of SSU-rRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDX52 DExD-box helicase 52 involved_in IEA InterPro GO_REF:0000002 NCBI chr16:30,138,075...30,168,803
Ensembl chr16:30,138,084...30,170,332 		JBrowse link
G LOC103244317 NHP2-like protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr23:13,631,584...13,632,034 JBrowse link
G LOC119618426 U6 snRNA-associated Sm-like protein LSm6 involved_in IEA TreeGrafter GO_REF:0000118
G LOC119621116 40S ribosomal protein S28-like involved_in IEA TreeGrafter GO_REF:0000118
G LOC119624301 40S ribosomal protein S28-like involved_in IEA TreeGrafter GO_REF:0000118
G LSM6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:92,719,482...92,734,351
Ensembl chr 7:92,719,503...92,735,321 		JBrowse link
G NOB1 NIN1 (RPN12) binding protein 1 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:57,646,386...57,661,014
Ensembl chr 5:57,646,587...57,662,406 		JBrowse link
G NOL11 nucleolar protein 11 involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr16:53,720,229...53,747,715
Ensembl chr16:53,720,571...53,747,658 		JBrowse link
G NOL7 nucleolar protein 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:58,528,431...58,532,563
Ensembl chr17:58,528,500...58,532,533 		JBrowse link
G NOP14 NOP14 nucleolar protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr27:45,765,452...45,803,010
Ensembl chr27:45,765,603...45,806,730 		JBrowse link
G RIOK1 RIO kinase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:64,776,613...64,804,989
Ensembl chr17:64,776,629...64,805,280 		JBrowse link
G RIOK2 RIO kinase 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:90,992,940...91,010,016
Ensembl chr 4:90,996,371...91,010,036 		JBrowse link
G RIOK3 RIO kinase 3 involved_in ISO (PMID:22418843) UniProt PMID:22418843 NCBI chr18:57,048,500...57,078,770
Ensembl chr18:57,048,447...57,078,312 		JBrowse link
G RPS19 ribosomal protein S19 involved_in ISO (PMID:16990592), (PMID:17053056) UniProt PMID:16990592 PMID:17053056 NCBI chr 6:36,067,959...36,085,581 JBrowse link
G RPS28 ribosomal protein S28 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:7,684,720...7,685,597 JBrowse link
G SNU13 small nuclear ribonucleoprotein 13 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:24,209,356...24,223,431
Ensembl chr19:24,206,653...24,216,686 		JBrowse link
G SRFBP1 serum response factor binding protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr23:25,063,926...25,124,601
Ensembl chr23:25,063,910...25,126,523 		JBrowse link
G TSR3 TSR3 ribosome maturation factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:1,237,625...1,240,287
Ensembl chr 5:1,237,821...1,240,191 		JBrowse link
G UTP4 UTP4 small subunit processome component involved_in ISO (PMID:22916032) UniProt PMID:22916032 NCBI chr 5:58,236,110...58,275,057
Ensembl chr 5:58,234,035...58,275,243 		JBrowse link
G WDR3 WD repeat domain 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:15,773,294...15,803,157
Ensembl chr20:15,772,511...15,799,581 		JBrowse link
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AATF apoptosis antagonizing transcription factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:30,728,070...30,838,816
Ensembl chr16:30,728,070...30,838,704 		JBrowse link
G BMS1 BMS1 ribosome biogenesis factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:38,459,322...38,503,090
Ensembl chr 9:38,459,237...38,505,560 		JBrowse link
G BYSL bystin like involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17242206) Ensembl
MGI		 PMID:17242206 GO_REF:0000107 NCBI chr17:30,230,001...30,241,684
Ensembl chr17:30,230,337...30,241,417 		JBrowse link
G DCAF13 DDB1 and CUL4 associated factor 13 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:98,271,304...98,297,950 JBrowse link
G DHX37 DEAH-box helicase 37 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:120,304,767...120,347,439
Ensembl chr11:120,304,314...120,347,227 		JBrowse link
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23562818) Ensembl
MGI		 PMID:23562818 GO_REF:0000107 NCBI chr 6:38,804,296...38,823,229
Ensembl chr 6:38,801,423...38,823,073 		JBrowse link
G GTF2H5 general transcription factor IIH subunit 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23562818) Ensembl
MGI		 PMID:23562818 GO_REF:0000107 Ensembl chr13:85,771,630...85,782,646 JBrowse link
G HEATR1 HEAT repeat containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr25:73,684,845...73,743,594
Ensembl chr25:73,685,895...73,743,654 		JBrowse link
G LOC103236113 pre-rRNA-processing protein TSR2 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:57,845,687...57,846,322 JBrowse link
G NGDN neuroguidin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr29:23,840,583...23,848,726
Ensembl chr29:23,840,639...23,849,653 		JBrowse link
G NOL10 nucleolar protein 10 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:96,929,399...97,045,962
Ensembl chr14:96,929,085...97,047,597 		JBrowse link
G PWP2 PWP2 small subunit processome component involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:87,858,003...87,881,072
Ensembl chr 2:87,858,029...87,881,102 		JBrowse link
G RPS16 ribosomal protein S16 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:34,039,470...34,042,278
Ensembl chr 6:34,039,251...34,042,313 		JBrowse link
G RPS19 ribosomal protein S19 involved_in ISO (PMID:16990592), (PMID:17053056) UniProt PMID:16990592 PMID:17053056 NCBI chr 6:36,067,959...36,085,581 JBrowse link
G RPS8 ribosomal protein S8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:88,011,614...88,014,769
Ensembl chr20:88,010,616...88,015,477 		JBrowse link
G RRP36 ribosomal RNA processing 36 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:29,130,607...29,138,585
Ensembl chr17:29,130,981...29,138,395 		JBrowse link
G SLX9 SLX9 ribosome biogenesis factor involved_in IEA InterPro GO_REF:0000002 NCBI chr 2:88,652,219...88,703,220
Ensembl chr 2:88,652,222...88,690,577 		JBrowse link
G TSR1 TSR1 ribosome maturation factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:1,955,566...1,970,424
Ensembl chr16:1,955,317...1,969,374 		JBrowse link
G TSR2 TSR2 ribosome maturation factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:50,532,958...50,555,179 JBrowse link
G UTP25 UTP25 small subunit processome component involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr25:19,601,165...19,625,274
Ensembl chr25:19,600,266...19,625,229 		JBrowse link
G UTP3 UTP3 small subunit processome component involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:19,196,995...19,199,149
Ensembl chr 7:19,197,280...19,198,725 		JBrowse link
G UTP4 UTP4 small subunit processome component involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:58,236,110...58,275,057
Ensembl chr 5:58,234,035...58,275,243 		JBrowse link
G UTP6 UTP6 small subunit processome component involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr16:25,337,595...25,377,832
Ensembl chr16:25,336,937...25,377,831 		JBrowse link
G WDR43 WD repeat domain 43 involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr14:78,651,387...78,691,829 JBrowse link
G WDR46 WD repeat domain 46 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:38,787,932...38,797,940
Ensembl chr17:38,788,275...38,799,858 		JBrowse link
mitochondrial large ribosomal subunit assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDX28 DEAD-box helicase 28 involved_in ISO (PMID:25683715) UniProt PMID:25683715 NCBI chr 5:59,412,602...59,415,170
Ensembl chr 5:59,413,265...59,414,905 		JBrowse link
G DHX30 DExH-box helicase 30 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:9,191,527...9,239,445
Ensembl chr22:9,206,175...9,239,372 		JBrowse link
G FASTKD2 FAST kinase domains 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:92,550,245...92,585,250
Ensembl chr10:92,549,883...92,587,039 		JBrowse link
G MIEF1 mitochondrial elongation factor 1 involved_in ISO (PMID:31666358) UniProt PMID:31666358 NCBI chr19:22,072,217...22,087,577
Ensembl chr19:22,081,838...22,085,527 		JBrowse link
G MRM2 mitochondrial rRNA methyltransferase 2 involved_in ISO (PMID:35177605) FlyBase PMID:35177605 NCBI chr28:19,336,935...19,355,221 JBrowse link
mitochondrial ribosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC103247084 nitric oxide-associated protein 1 involved_in ISO (MGI:5292654|PMID:21118999) UniProt PMID:21118999 MGI:5292654
G MPV17L MPV17 mitochondrial inner membrane protein like involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr 5:14,397,543...14,408,144 JBrowse link
G MPV17L2 MPV17 mitochondrial inner membrane protein like 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:16,667,878...16,671,368
Ensembl chr 6:16,668,141...16,670,676 		JBrowse link
G MRPS2 mitochondrial ribosomal protein S2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:2,665,725...2,669,478
Ensembl chr12:2,665,620...2,669,407 		JBrowse link
G MTERF3 mitochondrial transcription termination factor 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:91,203,095...91,223,524
Ensembl chr 8:91,203,169...91,223,512 		JBrowse link
G MTERF4 mitochondrial transcription termination factor 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:127,145,903...127,152,721
Ensembl chr10:127,146,466...127,152,655 		JBrowse link
G NGRN neugrin, neurite outgrowth associated involved_in IEA Ensembl GO_REF:0000107 NCBI chr29:8,809,776...8,816,862
Ensembl chr29:8,809,912...8,816,441 		JBrowse link
mitochondrial small ribosomal subunit assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MCAT malonyl-CoA-acyl carrier protein transacylase involved_in ISO (PMID:36482135) UniProt PMID:36482135 NCBI chr19:25,647,290...25,671,239
Ensembl chr19:25,659,856...25,670,894 		JBrowse link
G METTL17 methyltransferase like 17 involved_in ISO (PMID:36482135), (PMID:38199006) UniProt PMID:36482135 PMID:38199006 NCBI chr29:21,463,422...21,470,502
Ensembl chr29:21,463,612...21,470,699 		JBrowse link
negative regulation of ribosomal large subunit export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RBM10 RNA binding motif protein 10 involved_in ISO (PMID:35393574) UniProt PMID:35393574 NCBI chr  X:44,339,653...44,373,509
Ensembl chr  X:44,339,877...44,373,339 		JBrowse link
negative regulation of ribosome biogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MALSU1 mitochondrial assembly of ribosomal large subunit 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr21:34,999,587...35,011,064
Ensembl chr21:34,996,592...35,011,019 		JBrowse link
G PTEN phosphatase and tensin homolog involved_in ISO (MGI:3772418|PMID:18082964) CACAO PMID:18082964 MGI:3772418 NCBI chr 9:81,308,058...81,412,386
Ensembl chr 9:81,309,099...81,409,146 		JBrowse link
negative regulation of rRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KAT2B lysine acetyltransferase 2B involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:64,769,590...64,885,536
Ensembl chr15:64,770,185...64,886,219 		JBrowse link
G SHQ1 SHQ1, H/ACA ribonucleoprotein assembly factor acts_upstream_of_or_within ISO (PMID:20663920) MGI PMID:20663920 NCBI chr22:33,691,625...33,799,128
Ensembl chr22:33,691,120...33,795,450 		JBrowse link
positive regulation of ribosomal small subunit export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RIOK2 RIO kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:90,992,940...91,010,016
Ensembl chr 4:90,996,371...91,010,036 		JBrowse link
positive regulation of ribosome biogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G USP16 ubiquitin specific peptidase 16 involved_in ISO (PMID:32129764) UniProt PMID:32129764 NCBI chr 2:63,170,677...63,201,257
Ensembl chr 2:63,170,979...63,201,445 		JBrowse link
positive regulation of rRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BUD23 BUD23 rRNA methyltransferase and ribosome maturation factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:9,368,950...9,382,951
Ensembl chr28:9,368,726...9,382,925 		JBrowse link
G DIMT1 DIM1 rRNA methyltransferase and ribosome maturation factor involved_in ISO (PMID:25851604) UniProt PMID:25851604 NCBI chr 4:58,568,080...58,583,582
Ensembl chr 4:58,568,567...58,583,812 		JBrowse link
G HEATR1 HEAT repeat containing 1 involved_in ISO (PMID:17699751) UniProt PMID:17699751 NCBI chr25:73,684,845...73,743,594
Ensembl chr25:73,685,895...73,743,654 		JBrowse link
G RIOK1 RIO kinase 1 involved_in ISO (PMID:22072790) UniProt PMID:22072790 NCBI chr17:64,776,613...64,804,989
Ensembl chr17:64,776,629...64,805,280 		JBrowse link
G RIOK2 RIO kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:90,992,940...91,010,016
Ensembl chr 4:90,996,371...91,010,036 		JBrowse link
G SIRT7 sirtuin 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:73,785,223...73,792,773
Ensembl chr16:73,785,695...73,791,947 		JBrowse link
G TRMT112 tRNA methyltransferase activator subunit 11-2 involved_in ISO (PMID:25851604) UniProt PMID:25851604 NCBI chr 1:9,916,884...9,918,790 JBrowse link
G UTP15 UTP15 small subunit processome component involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:67,928,440...67,942,820
Ensembl chr 4:67,929,900...67,943,970 		JBrowse link
G WDR43 WD repeat domain 43 involved_in ISO (PMID:17699751) UniProt PMID:17699751 NCBI chr14:78,653,957...78,714,353 JBrowse link
G WDR75 WD repeat domain 75 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:74,953,086...74,989,662
Ensembl chr10:74,953,072...74,991,458 		JBrowse link
regulation of ribosome biogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G METTL18 methyltransferase 18, RPL3 N3(tau)-histidine involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:59,257,843...59,261,129
Ensembl chr25:59,259,130...59,260,248 		JBrowse link
regulation of rRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G METTL18 methyltransferase 18, RPL3 N3(tau)-histidine involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:59,257,843...59,261,129
Ensembl chr25:59,259,130...59,260,248 		JBrowse link
G NCL nucleolin ISO RGD PMID:2049089 RGD:9588272 NCBI chr10:117,478,279...117,487,810 JBrowse link
G USP36 ubiquitin specific peptidase 36 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:70,769,133...70,813,274
Ensembl chr16:70,769,797...70,810,844 		JBrowse link
G YTHDF2 YTH N6-methyladenosine RNA binding protein F2 involved_in ISO (PMID:31815440) UniProt PMID:31815440 NCBI chr20:104,041,657...104,078,705
Ensembl chr20:104,040,679...104,078,484 		JBrowse link
ribosomal large subunit biogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AFG2A AFG2 AAA ATPase homolog A involved_in ISO (PMID:35354024) UniProt PMID:35354024 NCBI chr 7:70,188,246...70,585,022 JBrowse link
G AFG2B AFG2 AAA ATPase homolog B involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:37,793,373...37,812,921
Ensembl chr26:37,793,379...37,811,582 		JBrowse link
G AIRIM AFG2 interacting ribosome maturation factor involved_in ISO (PMID:35354024) UniProt PMID:35354024 NCBI chr20:95,169,033...95,180,743
Ensembl chr20:95,169,230...95,181,593 		JBrowse link
G BOP1 BOP1 ribosomal biogenesis factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10891491) Ensembl
MGI
UniProt		 PMID:10891491 GO_REF:0000104 GO_REF:0000107 NCBI chr 8:138,473,377...138,503,715
Ensembl chr 8:138,473,441...138,503,661 		JBrowse link
G CINP cyclin dependent kinase 2 interacting protein involved_in ISO (PMID:35354024) UniProt PMID:35354024 NCBI chr24:80,278,863...80,288,270
Ensembl chr24:80,278,860...80,288,253 		JBrowse link
G EBNA1BP2 EBNA1 binding protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:89,625,691...89,634,204
Ensembl chr20:89,625,145...89,634,329
Ensembl chr20:89,625,145...89,634,329 		JBrowse link
G EIF6 eukaryotic translation initiation factor 6 involved_in IEA UniProt GO_REF:0000104 NCBI chr 2:56,185,419...56,190,993
Ensembl chr 2:56,184,679...56,191,012 		JBrowse link
G GTF3A general transcription factor IIIA involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:6,601,557...6,611,806
Ensembl chr 3:6,601,571...6,611,713 		JBrowse link
G GTPBP4 GTP binding protein 4 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:953,062...981,213
Ensembl chr 9:952,663...981,353 		JBrowse link
G HEATR3 HEAT repeat containing 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:35,865,090...35,906,611
Ensembl chr 5:35,865,134...35,908,271 		JBrowse link
G LOC103216112 60S ribosomal protein L26-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:66,139,690...66,140,327 JBrowse link
G LOC103221307 surfeit locus protein 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:22,662,598...22,663,929 JBrowse link
G LOC103227011 60S ribosomal protein L35a-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr21:109,089,302...109,089,752 JBrowse link
G LOC103231174 probable ribosome biogenesis protein RLP24 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr29:8,834,463...8,835,329 JBrowse link
G LOC103231744 60S ribosomal protein L7-like involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:25,154,621...25,155,575 JBrowse link
G LOC103232211 mRNA turnover protein 4 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:64,313,899...64,314,849 JBrowse link
G LOC103237171 mRNA turnover protein 4 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:91,545,502...91,546,989 JBrowse link
G LOC119625361 probable ribosome biogenesis protein RLP24 involved_in IEA TreeGrafter GO_REF:0000118
G LTO1 LTO1 maturation factor of ABCE1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:4,888,769...4,900,379
Ensembl chr 1:4,889,155...4,897,348 		JBrowse link
G MALSU1 mitochondrial assembly of ribosomal large subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:34,999,587...35,011,064
Ensembl chr21:34,996,592...35,011,019 		JBrowse link
G MRTO4 MRT4 homolog, ribosome maturation factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:113,299,433...113,306,729
Ensembl chr20:113,299,708...113,306,704 		JBrowse link
G NIP7 nucleolar pre-rRNA processing protein NIP7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:58,064,294...58,067,645
Ensembl chr 5:58,064,954...58,067,340 		JBrowse link
G NLE1 notchless homolog 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24062412) Ensembl
MGI		 PMID:24062412 GO_REF:0000107 NCBI chr16:28,635,054...28,645,527
Ensembl chr16:28,634,318...28,645,355 		JBrowse link
G NOC2L NOC2 like nucleolar associated transcriptional repressor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:130,473,526...130,488,570
Ensembl chr20:130,473,547...130,490,907 		JBrowse link
G NOP16 NOP16 nucleolar protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr23:78,387,634...78,392,405
Ensembl chr23:78,387,877...78,392,238 		JBrowse link
G NOP2 NOP2 nucleolar protein involved_in ISO (PMID:36161484) UniProt PMID:36161484 NCBI chr11:6,590,518...6,601,981
Ensembl chr11:6,590,642...6,601,552 		JBrowse link
G NPM1 nucleophosmin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18809582) TreeGrafter
MGI		 PMID:18809582 GO_REF:0000118 NCBI chr23:73,555,020...73,575,910
Ensembl chr23:73,555,260...73,575,925 		JBrowse link
G NVL nuclear VCP like involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:5,455,812...5,555,666
Ensembl chr25:5,455,646...5,556,770 		JBrowse link
G PAK1IP1 PAK1 interacting protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:61,435,120...61,448,650
Ensembl chr17:61,434,774...61,448,906 		JBrowse link
G PES1 pescadillo ribosomal biogenesis factor 1 involved_in IEA UniProt GO_REF:0000104 NCBI chr19:13,453,184...13,469,115
Ensembl chr19:13,453,160...13,469,012 		JBrowse link
G RPF2 ribosome production factor 2 homolog involved_in ISO (PMID:24120868) UniProt PMID:24120868 NCBI chr13:62,856,730...62,890,934 JBrowse link
G RPL11 ribosomal protein L11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:108,982,781...108,987,667
Ensembl chr20:108,981,723...108,987,734 		JBrowse link
G RPL14 ribosomal protein L14 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr22:1,949,789...1,954,518
Ensembl chr22:1,949,817...1,954,466 		JBrowse link
G RPL26 ribosomal protein L26 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:7,733,652...7,740,384
Ensembl chr16:7,732,921...7,740,325 		JBrowse link
G RPL26L1 ribosomal protein L26 like 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr23:75,128,511...75,136,527 JBrowse link
G RPL35A ribosomal protein L35a involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr15:91,666,800...91,672,138
Ensembl chr15:91,666,236...91,674,881 		JBrowse link
G RPL5 ribosomal protein L5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:40,416,553...40,427,027
Ensembl chr20:40,413,897...40,427,060 		JBrowse link
G RPL7 ribosomal protein L7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:68,899,626...68,902,757 JBrowse link
G RRP8 ribosomal RNA processing 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:58,221,861...58,225,470
Ensembl chr 1:58,221,869...58,225,329 		JBrowse link
G RRS1 ribosome biogenesis regulator 1 homolog involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:62,297,483...62,299,194
Ensembl chr 8:62,297,608...62,298,705 		JBrowse link
G RSL24D1 ribosomal L24 domain containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:28,230,029...28,246,108
Ensembl chr26:28,230,168...28,245,761 		JBrowse link
G SURF6 surfeit 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:4,803,231...4,804,973 JBrowse link
G TMA16 translation machinery associated 16 homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:109,944,195...109,970,599
Ensembl chr 7:109,944,567...109,970,593 		JBrowse link
G WDR12 WD repeat domain 12 involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chr10:88,616,540...88,649,743
Ensembl chr10:88,616,797...88,649,418 		JBrowse link
G WDR74 WD repeat domain 74 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 1:11,063,294...11,070,215
Ensembl chr 1:11,063,265...11,070,218 		JBrowse link
G ZNF622 zinc finger protein 622 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:16,131,215...16,145,763
Ensembl chr 4:16,127,777...16,145,777 		JBrowse link
ribosomal large subunit export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MDN1 midasin AAA ATPase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:14,403,372...14,578,351 JBrowse link
G NMD3 NMD3 ribosome export adaptor involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr15:29,592,847...29,765,928
Ensembl chr15:29,592,577...29,621,567 		JBrowse link
G NPM1 nucleophosmin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18809582) TreeGrafter
MGI		 PMID:18809582 GO_REF:0000118 NCBI chr23:73,555,020...73,575,910
Ensembl chr23:73,555,260...73,575,925 		JBrowse link
G NUP88 nucleoporin 88 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr16:4,795,525...4,829,194
Ensembl chr16:4,792,569...4,829,127 		JBrowse link
G RAN RAN, member RAS oncogene family involved_in ISO (PMID:12773398) ParkinsonsUK-UCL PMID:12773398 NCBI chr11:126,257,849...126,263,481 JBrowse link
G XPO1 exportin 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr14:45,428,279...45,487,965
Ensembl chr14:45,432,619...45,488,723 		JBrowse link
ribosomal small subunit assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERAL1 Era like 12S mitochondrial rRNA chaperone 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:22,609,396...22,621,428
Ensembl chr16:22,609,413...22,621,676 		JBrowse link
G FAU FAU ubiquitin like and ribosomal protein S30 fusion involved_in ISO (PMID:34318747) UniProt PMID:34318747 NCBI chr 1:9,106,708...9,108,284
Ensembl chr 1:9,106,252...9,109,304 		JBrowse link
G LOC103217743 40S ribosomal protein SA-like involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chr10:94,720,178...94,721,225 JBrowse link
G LOC103223422 ribosomal RNA-processing protein 7 homolog A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:25,038,946...25,136,071
Ensembl chr19:25,036,723...25,135,955 		JBrowse link
G LOC103230486 40S ribosomal protein SA-like involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chr25:48,288,085...48,300,554 JBrowse link
G LOC103232082 40S ribosomal protein SA-like involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chr  X:54,746,742...54,747,726 JBrowse link
G LOC103232697 40S ribosomal protein SA-like involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chr  X:118,703,599...118,704,583 JBrowse link
G LOC103241245 40S ribosomal protein SA-like involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chr14:14,037,710...14,039,280 JBrowse link
G LOC103246678 40S ribosomal protein SA-like involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chr 2:30,107,411...30,108,442 JBrowse link
G LOC119620086 40S ribosomal protein S27-like involved_in IEA TreeGrafter GO_REF:0000118
G LOC119621116 40S ribosomal protein S28-like involved_in IEA TreeGrafter GO_REF:0000118
G LOC119624301 40S ribosomal protein S28-like involved_in IEA TreeGrafter GO_REF:0000118
G MRPS7 mitochondrial ribosomal protein S7 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:46,407,080...46,411,753
Ensembl chr16:46,404,792...46,412,037 		JBrowse link
G PWP2 PWP2 small subunit processome component involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:87,858,003...87,881,072
Ensembl chr 2:87,858,029...87,881,102 		JBrowse link
G RPS10 ribosomal protein S10 ISO RGD PMID:3378620 RGD:2299075 NCBI chr17:37,668,265...37,676,789 JBrowse link
G RPS14 ribosomal protein S14 involved_in ISO
IEA		 RGD
TreeGrafter		 PMID:3378620 GO_REF:0000118 RGD:2299075 NCBI chr23:53,046,670...53,052,082
Ensembl chr23:53,044,994...53,050,194 		JBrowse link
G RPS15 ribosomal protein S15 involved_in ISO
IEA		 RGD
TreeGrafter		 PMID:3378620 GO_REF:0000118 RGD:2299075 NCBI chr 6:1,211,716...1,213,896
Ensembl chr 6:1,211,713...1,214,044 		JBrowse link
G RPS19 ribosomal protein S19 involved_in ISO (PMID:17053056) UniProt PMID:17053056 NCBI chr 6:36,067,959...36,085,581 JBrowse link
G RPS19 ribosomal protein S19 involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr 6:36,068,540...36,084,778 JBrowse link
G RPS2 ribosomal protein S2 ISO RGD PMID:3378620 RGD:2299075 NCBI chr 5:1,859,411...1,862,322
Ensembl chr 5:1,859,454...1,862,305 		JBrowse link
G RPS25 ribosomal protein S25 ISO RGD PMID:3378620 RGD:2299075 NCBI chr 1:110,386,840...110,389,492 JBrowse link
G RPS28 ribosomal protein S28 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:7,684,720...7,685,597 JBrowse link
G RPS5 ribosomal protein S5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:50,662,539...50,670,204
Ensembl chr 6:50,663,431...50,670,230 		JBrowse link
G RPS6 ribosomal protein S6 ISO RGD PMID:3378620 RGD:2299075 NCBI chr12:60,353,800...60,357,797
Ensembl chr12:60,353,817...60,357,759 		JBrowse link
G RPSA ribosomal protein SA involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chr15:23,915...29,889 JBrowse link
ribosomal small subunit biogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AATF apoptosis antagonizing transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:30,728,070...30,838,816
Ensembl chr16:30,728,070...30,838,704 		JBrowse link
G AK6 adenylate kinase 6 involved_in IEA UniProt GO_REF:0000104 NCBI chr 4:65,435,848...65,456,343
Ensembl chr 4:65,434,782...65,456,000 		JBrowse link
G BMS1 BMS1 ribosome biogenesis factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:38,459,322...38,503,090
Ensembl chr 9:38,459,237...38,505,560 		JBrowse link
G CUNH1orf131 chromosome unknown C1orf131 homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:68,500,539...68,518,646
Ensembl chr25:68,500,233...68,519,096 		JBrowse link
G DHX37 DEAH-box helicase 37 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:120,304,767...120,347,439
Ensembl chr11:120,304,314...120,347,227 		JBrowse link
G DIMT1 DIM1 rRNA methyltransferase and ribosome maturation factor involved_in ISO (PMID:34516797) UniProt PMID:34516797 NCBI chr 4:58,568,080...58,583,582
Ensembl chr 4:58,568,567...58,583,812 		JBrowse link
G DNTTIP2 deoxynucleotidyltransferase terminal interacting protein 2 involved_in ISO (PMID:34516797) UniProt PMID:34516797 NCBI chr20:39,368,484...39,381,022
Ensembl chr20:39,369,348...39,381,537 		JBrowse link
G EMG1 EMG1 N1-specific pseudouridine methyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:7,004,507...7,009,702
Ensembl chr11:7,004,645...7,009,527 		JBrowse link
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23562818) Ensembl
MGI		 PMID:23562818 GO_REF:0000107 NCBI chr 6:38,804,296...38,823,229
Ensembl chr 6:38,801,423...38,823,073 		JBrowse link
G EXOSC10 exosome component 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:120,672,590...120,694,887
Ensembl chr20:120,672,645...120,710,775 		JBrowse link
G FBL fibrillarin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:34,370,558...34,382,909
Ensembl chr 6:34,370,558...34,376,836 		JBrowse link
G FCF1 FCF1 rRNA-processing protein involved_in ISO (PMID:34516797) UniProt PMID:34516797 NCBI chr24:51,928,076...51,947,993 JBrowse link
G HEATR1 HEAT repeat containing 1 involved_in ISO (PMID:34516797) UniProt PMID:34516797 NCBI chr25:73,684,845...73,743,594
Ensembl chr25:73,685,895...73,743,654 		JBrowse link
G IMP3 IMP U3 small nucleolar ribonucleoprotein 3 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr26:7,793,302...7,794,976
Ensembl chr26:7,793,899...7,794,453 		JBrowse link
G IMP4 IMP U3 small nucleolar ribonucleoprotein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:62,049...66,112
Ensembl chr10:62,177...65,801 		JBrowse link
G KRR1 KRR1 small subunit processome component homolog involved_in ISO (PMID:34516797) UniProt PMID:34516797 NCBI chr11:71,105,372...71,118,039
Ensembl chr11:71,105,645...71,118,040 		JBrowse link
G LOC103219498 RNA 3'-terminal phosphate cyclase-like protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:74,688,284...74,754,184
Ensembl chr12:74,687,071...74,754,045 		JBrowse link
G LOC103221307 surfeit locus protein 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:22,662,598...22,663,929 JBrowse link
G LOC103244702 40S ribosomal protein S7-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr23:44,314,756...44,315,402 JBrowse link
G LOC103246456 40S ribosomal protein S9-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:26,620,558...26,621,336 JBrowse link
G LOC119621286 40S ribosomal protein S6 involved_in IEA Ensembl GO_REF:0000107
G LTV1 LTV1 ribosome biogenesis factor involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr13:29,362,386...29,380,831
Ensembl chr13:29,361,750...29,380,911 		JBrowse link
G METTL17 methyltransferase like 17 involved_in ISO (MGI:6436379|PMID:31487196) UniProt PMID:31487196 MGI:6436379 NCBI chr29:21,463,422...21,470,502
Ensembl chr29:21,463,612...21,470,699 		JBrowse link
G MPHOSPH10 M-phase phosphoprotein 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:36,018,448...36,038,295
Ensembl chr14:36,018,456...36,038,127 		JBrowse link
G NAT10 N-acetyltransferase 10 involved_in IEA UniProt GO_REF:0000104 NCBI chr 1:31,126,387...31,171,751
Ensembl chr 1:31,126,262...31,170,833 		JBrowse link
G NGDN neuroguidin involved_in ISO (PMID:34516797) UniProt PMID:34516797 NCBI chr29:23,840,583...23,848,726
Ensembl chr29:23,840,639...23,849,653 		JBrowse link
G NOB1 NIN1 (RPN12) binding protein 1 homolog involved_in IEA InterPro GO_REF:0000002 NCBI chr 5:57,646,386...57,661,014
Ensembl chr 5:57,646,587...57,662,406 		JBrowse link
G NOL6 nucleolar protein 6 involved_in ISO (PMID:34516797) UniProt PMID:34516797 NCBI chr12:46,791,704...46,804,091
Ensembl chr12:46,791,725...46,805,338 		JBrowse link
G NOL7 nucleolar protein 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:58,528,431...58,532,563
Ensembl chr17:58,528,500...58,532,533 		JBrowse link
G NOM1 nucleolar protein with MIF4G domain 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr21:125,078,090...125,098,819 JBrowse link
G NOP56 NOP56 ribonucleoprotein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:53,882,070...53,887,867
Ensembl chr 2:53,882,169...53,887,565 		JBrowse link
G NOP58 NOP58 ribonucleoprotein involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:87,989,687...88,026,774
Ensembl chr10:87,989,699...88,026,904 		JBrowse link
G NPM1 nucleophosmin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18809582) TreeGrafter
MGI		 PMID:18809582 GO_REF:0000118 NCBI chr23:73,555,020...73,575,910
Ensembl chr23:73,555,260...73,575,925 		JBrowse link
G PNO1 partner of NOB1 homolog involved_in ISO (PMID:34516797) UniProt PMID:34516797 NCBI chr14:38,910,265...38,927,213
Ensembl chr14:38,911,410...38,927,172 		JBrowse link
G PWP2 PWP2 small subunit processome component involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:87,858,003...87,881,072
Ensembl chr 2:87,858,029...87,881,102 		JBrowse link
G RIOK1 RIO kinase 1 involved_in ISO (PMID:22072790) UniProt PMID:22072790 NCBI chr17:64,776,613...64,804,989
Ensembl chr17:64,776,629...64,805,280 		JBrowse link
G RIOK2 RIO kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:90,992,940...91,010,016
Ensembl chr 4:90,996,371...91,010,036 		JBrowse link
G RPS11 ribosomal protein S11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:42,678,361...42,681,698
Ensembl chr 6:42,677,690...42,682,759 		JBrowse link
G RPS12 ribosomal protein S12 involved_in ISO (PMID:34516797) UniProt PMID:34516797 NCBI chr13:40,703,285...40,706,235
Ensembl chr13:40,701,883...40,706,368 		JBrowse link
G RPS13 ribosomal protein S13 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:47,883,166...47,886,369
Ensembl chr 1:47,883,086...47,887,951 		JBrowse link
G RPS14 ribosomal protein S14 involved_in ISO (PMID:34516797) UniProt PMID:34516797 NCBI chr23:53,046,670...53,052,082
Ensembl chr23:53,044,994...53,050,194 		JBrowse link
G RPS15 ribosomal protein S15 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:1,211,716...1,213,896
Ensembl chr 6:1,211,713...1,214,044 		JBrowse link
G RPS15A ribosomal protein S15a involved_in ISO (PMID:34516797) UniProt PMID:34516797 NCBI chr 5:17,082,307...17,100,719
Ensembl chr 5:17,082,137...17,100,780 		JBrowse link
G RPS16 ribosomal protein S16 involved_in ISO (PMID:34516797)
(PMID:18697920)		 UniProt PMID:18697920 PMID:34516797 NCBI chr 6:34,039,470...34,042,278
Ensembl chr 6:34,039,251...34,042,313 		JBrowse link
G RPS17 ribosomal protein S17 involved_in ISO (PMID:18697920)
(PMID:34516797)		 UniProt PMID:18697920 PMID:34516797 NCBI chr29:3,109,426...3,113,538 JBrowse link
G RPS19 ribosomal protein S19 involved_in ISO (PMID:18697920)
(PMID:34516797)		 UniProt PMID:18697920 PMID:34516797 NCBI chr 6:36,067,959...36,085,581 JBrowse link
G RPS19BP1 ribosomal protein S19 binding protein 1 involved_in ISO (PMID:34516797) UniProt PMID:34516797 NCBI chr19:22,099,664...22,104,311 JBrowse link
G RPS23 ribosomal protein S23 involved_in ISO (PMID:34516797) UniProt PMID:34516797 NCBI chr 4:76,394,049...76,396,435
Ensembl chr 4:76,392,625...76,396,331 		JBrowse link
G RPS24 ribosomal protein S24 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:53,400,876...53,407,746
Ensembl chr 9:53,398,783...53,407,697 		JBrowse link
G RPS25 ribosomal protein S25 involved_in ISO (PMID:18697920) FlyBase PMID:18697920 NCBI chr 1:110,386,840...110,389,492 JBrowse link
G RPS27 ribosomal protein S27 involved_in ISO (PMID:34516797) UniProt PMID:34516797 NCBI chr20:9,821,812...9,823,267 JBrowse link
G RPS27A ribosomal protein S27a involved_in ISO (PMID:34516797) UniProt PMID:34516797 NCBI chr14:51,664,098...51,667,138
Ensembl chr14:51,664,101...51,667,011 		JBrowse link
G RPS28 ribosomal protein S28 involved_in ISO (PMID:18697920)
(PMID:34516797)		 UniProt PMID:18697920 PMID:34516797 NCBI chr 6:7,684,720...7,685,597 JBrowse link
G RPS4X ribosomal protein S4 X-linked involved_in ISO (PMID:34516797) UniProt PMID:34516797 NCBI chr  X:62,093,900...62,098,528
Ensembl chr  X:62,093,902...62,097,466 		JBrowse link
G RPS5 ribosomal protein S5 involved_in ISO (PMID:34516797) UniProt PMID:34516797 NCBI chr 6:50,662,539...50,670,204
Ensembl chr 6:50,663,431...50,670,230 		JBrowse link
G RPS6 ribosomal protein S6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10856218) Ensembl
MGI		 PMID:10856218 GO_REF:0000107 NCBI chr12:60,353,800...60,357,797
Ensembl chr12:60,353,817...60,357,759 		JBrowse link
G RPS7 ribosomal protein S7 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr14:104,069,825...104,075,669
Ensembl chr14:104,069,645...104,075,647 		JBrowse link
G RPS8 ribosomal protein S8 involved_in ISO (PMID:34516797) UniProt PMID:34516797 NCBI chr20:88,011,614...88,014,769
Ensembl chr20:88,010,616...88,015,477 		JBrowse link
G RPS9 ribosomal protein S9 involved_in ISO (PMID:34516797) UniProt PMID:34516797 NCBI chr 6:46,865,339...46,882,947 JBrowse link
G RRP36 ribosomal RNA processing 36 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:29,130,607...29,138,585
Ensembl chr17:29,130,981...29,138,395 		JBrowse link
G RRP7A ribosomal RNA processing 7 homolog A involved_in ISO (PMID:34516797) UniProt PMID:34516797
G RRP9 ribosomal RNA processing 9, U3 small nucleolar RNA binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:13,301,525...13,310,132
Ensembl chr22:13,300,799...13,310,137 		JBrowse link
G SNU13 small nuclear ribonucleoprotein 13 involved_in ISO (PMID:34516797) UniProt PMID:34516797 NCBI chr19:24,209,356...24,223,431
Ensembl chr19:24,206,653...24,216,686 		JBrowse link
G SURF6 surfeit 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:4,803,231...4,804,973 JBrowse link
G TBL3 transducin beta like 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:1,867,943...1,874,640
Ensembl chr 5:1,867,917...1,875,236 		JBrowse link
G UTP11 UTP11 small subunit processome component involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:94,845,537...94,858,198
Ensembl chr20:94,845,560...94,858,192 		JBrowse link
G UTP15 UTP15 small subunit processome component involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:67,928,440...67,942,820
Ensembl chr 4:67,929,900...67,943,970 		JBrowse link
G UTP18 UTP18 small subunit processome component involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:42,050,447...42,084,950
Ensembl chr16:42,050,172...42,085,603 		JBrowse link
G UTP20 UTP20 small subunit processome component involved_in ISO (PMID:34516797) UniProt PMID:34516797 NCBI chr11:96,549,046...96,657,494
Ensembl chr11:96,549,037...96,659,699 		JBrowse link
G UTP3 UTP3 small subunit processome component involved_in ISO (PMID:34516797) UniProt PMID:34516797 NCBI chr 7:19,196,995...19,199,149
Ensembl chr 7:19,197,280...19,198,725 		JBrowse link
G UTP4 UTP4 small subunit processome component involved_in ISO (PMID:34516797) UniProt PMID:34516797 NCBI chr 5:58,236,110...58,275,057
Ensembl chr 5:58,234,035...58,275,243 		JBrowse link
G UTP6 UTP6 small subunit processome component involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:25,337,595...25,377,832
Ensembl chr16:25,336,937...25,377,831 		JBrowse link
G WDR3 WD repeat domain 3 involved_in ISO (PMID:34516797) UniProt PMID:34516797 NCBI chr20:15,773,294...15,803,157
Ensembl chr20:15,772,511...15,799,581 		JBrowse link
G WDR36 WD repeat domain 36 involved_in ISO (PMID:34516797) UniProt PMID:34516797 NCBI chr23:14,427,459...14,464,125
Ensembl chr23:14,427,487...14,466,704 		JBrowse link
G WDR43 WD repeat domain 43 involved_in ISO (PMID:34516797) UniProt PMID:34516797 NCBI chr14:78,653,957...78,714,353 JBrowse link
G WDR46 WD repeat domain 46 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:38,787,932...38,797,940
Ensembl chr17:38,788,275...38,799,858 		JBrowse link
G WDR75 WD repeat domain 75 involved_in ISO (PMID:34516797) UniProt PMID:34516797 NCBI chr10:74,953,086...74,989,662
Ensembl chr10:74,953,072...74,991,458 		JBrowse link
ribosomal small subunit export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LTV1 LTV1 ribosome biogenesis factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:29,362,386...29,380,831
Ensembl chr13:29,361,750...29,380,911 		JBrowse link
G NOP9 NOP9 nucleolar protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr24:1,282,877...1,288,265
Ensembl chr24:1,282,873...1,288,148 		JBrowse link
G NPM1 nucleophosmin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18809582) TreeGrafter
MGI		 PMID:18809582 GO_REF:0000118 NCBI chr23:73,555,020...73,575,910
Ensembl chr23:73,555,260...73,575,925 		JBrowse link
G NUP88 nucleoporin 88 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr16:4,795,525...4,829,194
Ensembl chr16:4,792,569...4,829,127 		JBrowse link
G RAN RAN, member RAS oncogene family involved_in ISO (PMID:12773398) ParkinsonsUK-UCL PMID:12773398 NCBI chr11:126,257,849...126,263,481 JBrowse link
G RPS15 ribosomal protein S15 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:1,211,716...1,213,896
Ensembl chr 6:1,211,713...1,214,044 		JBrowse link
G XPO1 exportin 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr14:45,428,279...45,487,965
Ensembl chr14:45,432,619...45,488,723 		JBrowse link
ribosomal subunit export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCE1 ATP binding cassette subfamily E member 1 involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr 7:91,673,329...91,693,035 JBrowse link
G EIF6 eukaryotic translation initiation factor 6 involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chr 2:56,185,419...56,190,993
Ensembl chr 2:56,184,679...56,191,012 		JBrowse link
G LSG1 large 60S subunit nuclear export GTPase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:88,729,016...88,758,421
Ensembl chr15:88,729,031...88,759,102 		JBrowse link
G RAN RAN, member RAS oncogene family involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr11:126,258,417...126,260,583 JBrowse link
G TSC1 TSC complex subunit 1 involved_in ISO (PMID:17308101) UniProt PMID:17308101 NCBI chr12:5,195,604...5,249,042
Ensembl chr12:5,195,675...5,244,157 		JBrowse link
G XPO1 exportin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:45,428,279...45,487,965
Ensembl chr14:45,432,619...45,488,723 		JBrowse link
ribosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DHX29 DExH-box helicase 29 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:51,491,356...51,543,889
Ensembl chr 4:51,491,598...51,543,774 		JBrowse link
G DHX37 DEAH-box helicase 37 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:120,304,767...120,347,439
Ensembl chr11:120,304,314...120,347,227 		JBrowse link
G EIF1AX eukaryotic translation initiation factor 1A X-linked involved_in ISO (PMID:35732735) UniProt PMID:35732735 NCBI chr  X:18,589,940...18,606,680
Ensembl chr  X:18,588,232...18,606,648 		JBrowse link
G EIF2A eukaryotic translation initiation factor 2A involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:40,112,926...40,146,629
Ensembl chr15:40,111,878...40,146,554 		JBrowse link
G EIF5 eukaryotic translation initiation factor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:81,303,713...81,313,254
Ensembl chr24:81,303,911...81,313,807 		JBrowse link
G EIF5B eukaryotic translation initiation factor 5B involved_in ISO (PMID:10659855), (PMID:35732735) UniProt PMID:10659855 PMID:35732735 NCBI chr14:3,066,147...3,128,498
Ensembl chr14:3,066,150...3,127,861 		JBrowse link
G MTERF4 mitochondrial transcription termination factor 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21531335) Ensembl
MGI		 PMID:21531335 GO_REF:0000107 NCBI chr10:127,145,903...127,152,721
Ensembl chr10:127,146,466...127,152,655 		JBrowse link
G NIP7 nucleolar pre-rRNA processing protein NIP7 involved_in IEA InterPro GO_REF:0000002 NCBI chr 5:58,064,294...58,067,645
Ensembl chr 5:58,064,954...58,067,340 		JBrowse link
rRNA (guanine-N7)-methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BUD23 BUD23 rRNA methyltransferase and ribosome maturation factor involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr28:9,368,950...9,382,951
Ensembl chr28:9,368,726...9,382,925 		JBrowse link
G LOC103236366 multifunctional methyltransferase subunit TRM112-like protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:97,541,431...97,542,021 JBrowse link
G LOC103245638 multifunctional methyltransferase subunit TRM112-like protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:32,923,132...32,923,770 JBrowse link
G LOC103246566 multifunctional methyltransferase subunit TRM112-like protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr28:1,484,388...1,485,007 JBrowse link
G TRMT112 tRNA methyltransferase activator subunit 11-2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:9,916,884...9,918,790 JBrowse link
rRNA 2'-O-methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MRM1 mitochondrial rRNA methyltransferase 1 involved_in IEA GOC GO_REF:0000108 Ensembl chr16:31,181,477...31,188,090 JBrowse link
G MRM3 mitochondrial rRNA methyltransferase 3 involved_in IEA GOC GO_REF:0000108 Ensembl chr16:526,047...534,638 JBrowse link
rRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERI1 exoribonuclease 1 involved_in ISO (MGI:3838267|PMID:18438418) UniProt PMID:18438418 MGI:3838267 NCBI chr 8:9,936,951...10,055,407
Ensembl chr 8:10,023,909...10,055,405 		JBrowse link
rRNA acetylation involved in maturation of SSU-rRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NAT10 N-acetyltransferase 10 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:31,126,387...31,171,751
Ensembl chr 1:31,126,262...31,170,833 		JBrowse link
rRNA base methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EMG1 EMG1 N1-specific pseudouridine methyltransferase involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr11:7,004,507...7,009,702
Ensembl chr11:7,004,645...7,009,527 		JBrowse link
G FDXACB1 ferredoxin-fold anticodon binding domain containing 1 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 1:103,224,186...103,229,456
Ensembl chr 1:103,225,050...103,229,138 		JBrowse link
G METTL15 methyltransferase 15, mitochondrial 12S rRNA N4-cytidine involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:36,757,855...37,003,171
Ensembl chr 1:36,782,711...37,001,349 		JBrowse link
G METTL16 methyltransferase 16, RNA N6-adenosine involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:2,050,362...2,127,001
Ensembl chr16:2,050,955...2,124,824 		JBrowse link
G NOP2 NOP2 nucleolar protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:6,590,518...6,601,981
Ensembl chr11:6,590,642...6,601,552 		JBrowse link
G NSUN5 NOP2/Sun RNA methyltransferase 5 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr28:9,737,722...9,743,372
Ensembl chr28:9,737,777...9,743,189 		JBrowse link
rRNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DIMT1 DIM1 rRNA methyltransferase and ribosome maturation factor involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chr 4:58,568,080...58,583,582
Ensembl chr 4:58,568,567...58,583,812 		JBrowse link
G FBL fibrillarin involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:34,370,558...34,382,909
Ensembl chr 6:34,370,558...34,376,836 		JBrowse link
G FBLL1 fibrillarin like 1 involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr23:70,757,568...70,758,760 JBrowse link
G FTSJ3 FtsJ RNA 2'-O-methyltransferase 3 involved_in IEA InterPro
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 NCBI chr16:57,462,623...57,469,972
Ensembl chr16:57,462,798...57,469,604 		JBrowse link
G METTL25B methyltransferase like 25B involved_in IEA GOC GO_REF:0000108 NCBI chr20:7,127,876...7,136,051
Ensembl chr20:7,123,538...7,135,961 		JBrowse link
G METTL5 methyltransferase 5, N6-adenosine involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:55,339,009...55,352,353
Ensembl chr10:55,337,029...55,351,857 		JBrowse link
G MRM1 mitochondrial rRNA methyltransferase 1 involved_in IEA InterPro GO_REF:0000002 Ensembl chr16:31,181,477...31,188,090 JBrowse link
G MRM2 mitochondrial rRNA methyltransferase 2 involved_in IEA GOC GO_REF:0000108 NCBI chr28:19,336,935...19,355,221 JBrowse link
G NSUN3 NOP2/Sun RNA methyltransferase 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr22:86,576,985...86,643,030
Ensembl chr22:86,577,280...86,642,653 		JBrowse link
G NSUN4 NOP2/Sun RNA methyltransferase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:86,432,047...86,453,481
Ensembl chr20:86,432,414...86,453,157 		JBrowse link
G RRP8 ribosomal RNA processing 8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:58,221,861...58,225,470
Ensembl chr 1:58,221,869...58,225,329 		JBrowse link
G TFB1M transcription factor B1, mitochondrial involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chr13:82,823,528...82,877,958
Ensembl chr13:82,823,640...82,877,923 		JBrowse link
G TFB2M transcription factor B2, mitochondrial involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chr25:83,564,405...83,591,980
Ensembl chr25:83,564,432...83,591,930 		JBrowse link
G TRMT112 tRNA methyltransferase activator subunit 11-2 involved_in ISO (PMID:31328227), (PMID:35033535) UniProt PMID:31328227 PMID:35033535 NCBI chr 1:9,916,884...9,918,790 JBrowse link
G ZCCHC4 zinc finger CCHC-type containing 4 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr27:24,995,595...25,052,168
Ensembl chr27:24,995,053...25,019,951 		JBrowse link
rRNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DIMT1 DIM1 rRNA methyltransferase and ribosome maturation factor involved_in IEA InterPro GO_REF:0000002 NCBI chr 4:58,568,080...58,583,582
Ensembl chr 4:58,568,567...58,583,812 		JBrowse link
G METTL25B methyltransferase like 25B involved_in IEA InterPro GO_REF:0000002 NCBI chr20:7,127,876...7,136,051
Ensembl chr20:7,123,538...7,135,961 		JBrowse link
G MRM1 mitochondrial rRNA methyltransferase 1 involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr16:31,181,477...31,188,090 JBrowse link
G NAT10 N-acetyltransferase 10 involved_in IEA UniProt GO_REF:0000104 NCBI chr 1:31,126,387...31,171,751
Ensembl chr 1:31,126,262...31,170,833 		JBrowse link
G TFB1M transcription factor B1, mitochondrial involved_in IEA InterPro GO_REF:0000002 NCBI chr13:82,823,528...82,877,958
Ensembl chr13:82,823,640...82,877,923 		JBrowse link
G TFB2M transcription factor B2, mitochondrial involved_in IEA InterPro GO_REF:0000002 NCBI chr25:83,564,405...83,591,980
Ensembl chr25:83,564,432...83,591,930 		JBrowse link
rRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AK6 adenylate kinase 6 involved_in IEA UniProt GO_REF:0000043 NCBI chr 4:65,435,848...65,456,343
Ensembl chr 4:65,434,782...65,456,000 		JBrowse link
G BOP1 BOP1 ribosomal biogenesis factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10891491)
(PMID:15225545)		 InterPro
MGI
UniProt
Ensembl		 PMID:10891491 PMID:15225545 GO_REF:0000002 GO_REF:0000043 GO_REF:0000107 NCBI chr 8:138,473,377...138,503,715
Ensembl chr 8:138,473,441...138,503,661 		JBrowse link
G BRIX1 biogenesis of ribosomes BRX1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 4:33,807,951...33,818,546
Ensembl chr 4:33,808,309...33,820,658 		JBrowse link
G BYSL bystin like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:30,230,001...30,241,684
Ensembl chr17:30,230,337...30,241,417 		JBrowse link
G C1D C1D nuclear receptor corepressor involved_in IEA UniProt GO_REF:0000043 NCBI chr14:39,019,972...39,043,109
Ensembl chr14:39,019,588...39,044,032 		JBrowse link
G DCAF13 DDB1 and CUL4 associated factor 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:98,271,304...98,297,950 JBrowse link
G DDX1 DEAD-box helicase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:92,007,446...92,045,414
Ensembl chr14:92,007,036...92,045,190 		JBrowse link
G DDX10 DEAD-box helicase 10 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:100,089,094...100,369,032
Ensembl chr 1:100,089,153...100,357,309 		JBrowse link
G DDX27 DEAD-box helicase 27 involved_in ISO (PMID:25825154) UniProt PMID:25825154 NCBI chr 2:14,741,882...14,766,900
Ensembl chr 2:14,742,113...14,766,933 		JBrowse link
G DDX47 DEAD-box helicase 47 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:12,716,375...12,734,494
Ensembl chr11:12,716,290...12,734,061 		JBrowse link
G DIMT1 DIM1 rRNA methyltransferase and ribosome maturation factor involved_in IEA UniProt GO_REF:0000043 NCBI chr 4:58,568,080...58,583,582
Ensembl chr 4:58,568,567...58,583,812 		JBrowse link
G DROSHA drosha ribonuclease III involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 4:30,665,759...30,807,047
Ensembl chr 4:30,665,131...30,795,442 		JBrowse link
G EBNA1BP2 EBNA1 binding protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:89,625,691...89,634,204
Ensembl chr20:89,625,145...89,634,329
Ensembl chr20:89,625,145...89,634,329 		JBrowse link
G EMG1 EMG1 N1-specific pseudouridine methyltransferase involved_in IEA UniProt GO_REF:0000043 NCBI chr11:7,004,507...7,009,702
Ensembl chr11:7,004,645...7,009,527 		JBrowse link
G ESF1 ESF1 nucleolar pre-rRNA processing protein homolog involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 2:42,600,989...42,670,600
Ensembl chr 2:42,601,007...42,668,874 		JBrowse link
G EXOSC10 exosome component 10 involved_in IEA UniProt GO_REF:0000043 NCBI chr20:120,672,590...120,694,887
Ensembl chr20:120,672,645...120,710,775 		JBrowse link
G EXOSC2 exosome component 2 involved_in IEA UniProt GO_REF:0000043 NCBI chr12:7,441,812...7,452,979
Ensembl chr12:7,442,791...7,452,964 		JBrowse link
G EXOSC3 exosome component 3 involved_in IEA UniProt GO_REF:0000043 NCBI chr12:42,798,609...42,819,431
Ensembl chr12:42,799,067...42,803,471 		JBrowse link
G FBL fibrillarin involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:34,370,558...34,382,909
Ensembl chr 6:34,370,558...34,376,836 		JBrowse link
G FBLL1 fibrillarin like 1 involved_in IEA InterPro GO_REF:0000002 Ensembl chr23:70,757,568...70,758,760 JBrowse link
G FCF1 FCF1 rRNA-processing protein involved_in IEA UniProt GO_REF:0000043 NCBI chr24:51,928,076...51,947,993 JBrowse link
G FTSJ3 FtsJ RNA 2'-O-methyltransferase 3 involved_in IEA UniProt GO_REF:0000043 NCBI chr16:57,462,623...57,469,972
Ensembl chr16:57,462,798...57,469,604 		JBrowse link
G GAR1 GAR1 ribonucleoprotein involved_in IEA UniProt GO_REF:0000043 NCBI chr 7:57,713,245...57,722,831
Ensembl chr 7:57,713,881...57,722,224 		JBrowse link
G GEMIN4 gem nuclear organelle associated protein 4 involved_in IEA InterPro GO_REF:0000002 NCBI chr16:494,882...501,634
Ensembl chr16:490,523...501,594 		JBrowse link
G HEATR1 HEAT repeat containing 1 involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chr25:73,684,845...73,743,594
Ensembl chr25:73,685,895...73,743,654 		JBrowse link
G IMP3 IMP U3 small nucleolar ribonucleoprotein 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12655004) Ensembl
MGI
TreeGrafter		 PMID:12655004 GO_REF:0000107 GO_REF:0000118 NCBI chr26:7,793,302...7,794,976
Ensembl chr26:7,793,899...7,794,453 		JBrowse link
G IMP4 IMP U3 small nucleolar ribonucleoprotein 4 involved_in IEA UniProt
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000118 NCBI chr10:62,049...66,112
Ensembl chr10:62,177...65,801 		JBrowse link
G KRR1 KRR1 small subunit processome component homolog involved_in IEA UniProt GO_REF:0000043 NCBI chr11:71,105,372...71,118,039
Ensembl chr11:71,105,645...71,118,040 		JBrowse link
G LAS1L LAS1 like ribosome biogenesis factor involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr  X:55,503,201...55,524,995
Ensembl chr  X:55,503,109...55,525,026 		JBrowse link
G LOC103215926 nuclear nucleic acid-binding protein C1D-like involved_in IEA UniProt GO_REF:0000043 NCBI chr 9:51,752,321...51,753,110 JBrowse link
G LOC103223422 ribosomal RNA-processing protein 7 homolog A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:25,038,946...25,136,071
Ensembl chr19:25,036,723...25,135,955 		JBrowse link
G LOC103224065 ribosome biogenesis protein NSA2 homolog involved_in IEA UniProt GO_REF:0000043 NCBI chr20:12,979,244...12,980,183 JBrowse link
G LOC103229684 ribosome production factor 1 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr 5:20,408,938...20,410,218 JBrowse link
G LOC103231744 60S ribosomal protein L7-like involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:25,154,621...25,155,575 JBrowse link
G LOC103232211 mRNA turnover protein 4 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:64,313,899...64,314,849 JBrowse link
G LOC103233098 ribosome biogenesis protein NSA2 homolog involved_in IEA UniProt GO_REF:0000043 NCBI chr 5:45,756,269...45,757,257 JBrowse link
G LOC103236113 pre-rRNA-processing protein TSR2 homolog involved_in IEA UniProt GO_REF:0000043 NCBI chr 7:57,845,687...57,846,322 JBrowse link
G LOC103237171 mRNA turnover protein 4 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:91,545,502...91,546,989 JBrowse link
G LOC103242136 peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr16:2,167,195...2,167,675 JBrowse link
G LOC103244702 40S ribosomal protein S7-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr23:44,314,756...44,315,402 JBrowse link
G LOC103245936 putative ribosome-binding factor A, mitochondrial involved_in IEA InterPro GO_REF:0000002 NCBI chr26:50,920,095...50,921,597 JBrowse link
G LOC103248157 rRNA-processing protein FCF1 homolog involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:77,180,429...77,181,144 JBrowse link
G LOC119618426 U6 snRNA-associated Sm-like protein LSm6 involved_in IEA UniProt GO_REF:0000043
G LOC119620268 peptidyl-prolyl cis-trans isomerase NIMA-interacting 4-like involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118
G LOC119621286 40S ribosomal protein S6 involved_in IEA Ensembl GO_REF:0000107
G LSM6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IEA UniProt GO_REF:0000043 NCBI chr 7:92,719,482...92,734,351
Ensembl chr 7:92,719,503...92,735,321 		JBrowse link
G LYAR Ly1 antibody reactive involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr27:40,410,849...40,433,942 JBrowse link
G METTL5 methyltransferase 5, N6-adenosine involved_in ISO (PMID:33428944) UniProt PMID:33428944 NCBI chr10:55,339,009...55,352,353
Ensembl chr10:55,337,029...55,351,857 		JBrowse link
G MPHOSPH10 M-phase phosphoprotein 10 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr14:36,018,448...36,038,295
Ensembl chr14:36,018,456...36,038,127 		JBrowse link
G MRTO4 MRT4 homolog, ribosome maturation factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:113,299,433...113,306,729
Ensembl chr20:113,299,708...113,306,704 		JBrowse link
G MTREX Mtr4 exosome RNA helicase involved_in ISO (PMID:29107693) UniProt PMID:29107693 NCBI chr 4:51,543,976...51,667,458
Ensembl chr 4:51,544,211...51,667,254 		JBrowse link
G NAT10 N-acetyltransferase 10 involved_in IEA UniProt GO_REF:0000043 NCBI chr 1:31,126,387...31,171,751
Ensembl chr 1:31,126,262...31,170,833 		JBrowse link
G NHP2 NHP2 ribonucleoprotein involved_in IEA UniProt GO_REF:0000043 NCBI chr23:79,842,690...79,847,138
Ensembl chr23:79,842,948...79,846,984 		JBrowse link
G NOL11 nucleolar protein 11 involved_in IEA UniProt GO_REF:0000043 NCBI chr16:53,720,229...53,747,715
Ensembl chr16:53,720,571...53,747,658 		JBrowse link
G NOL6 nucleolar protein 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:46,791,704...46,804,091
Ensembl chr12:46,791,725...46,805,338 		JBrowse link
G NOL8 nucleolar protein 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:102,823,206...102,851,484
Ensembl chr12:102,822,839...102,843,078 		JBrowse link
G NOP10 NOP10 ribonucleoprotein involved_in IEA UniProt GO_REF:0000043 NCBI chr26:48,563,535...48,566,409
Ensembl chr26:48,563,517...48,566,745 		JBrowse link
G NOP2 NOP2 nucleolar protein involved_in ISO (PMID:36161484) UniProt PMID:36161484 NCBI chr11:6,590,518...6,601,981
Ensembl chr11:6,590,642...6,601,552 		JBrowse link
G NOP53 NOP53 ribosome biogenesis factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:41,058,199...41,070,220
Ensembl chr 6:41,057,906...41,071,202 		JBrowse link
G NPM3 nucleophosmin/nucleoplasmin 3 acts_upstream_of_or_within ISO (PMID:15596447) MGI PMID:15596447 NCBI chr 9:94,809,050...94,811,169
Ensembl chr 9:94,809,468...94,811,091 		JBrowse link
G NSA2 NSA2 ribosome biogenesis factor involved_in IEA UniProt GO_REF:0000043 NCBI chr 4:69,114,609...69,125,319
Ensembl chr 4:69,116,582...69,123,948 		JBrowse link
G NVL nuclear VCP like involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:5,455,812...5,555,666
Ensembl chr25:5,455,646...5,556,770 		JBrowse link
G PDCD11 programmed cell death 11 involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr 9:96,442,214...96,493,320
Ensembl chr 9:96,442,237...96,493,318 		JBrowse link
G PELP1 proline, glutamate and leucine rich protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:4,156,088...4,187,591
Ensembl chr16:4,154,136...4,187,751 		JBrowse link
G PES1 pescadillo ribosomal biogenesis factor 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16738141)
(PMID:15225545)		 MGI
UniProt
Ensembl		 PMID:15225545 PMID:16738141 GO_REF:0000043 GO_REF:0000107 NCBI chr19:13,453,184...13,469,115
Ensembl chr19:13,453,160...13,469,012 		JBrowse link
G PIH1D1 PIH1 domain containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:42,627,125...42,633,467
Ensembl chr 6:42,627,097...42,632,932 		JBrowse link
G PIH1D2 PIH1 domain containing 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:103,423,113...103,430,815
Ensembl chr 1:103,421,117...103,430,727 		JBrowse link
G PIN4 peptidylprolyl cis/trans isomerase, NIMA-interacting 4 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr  X:61,994,237...62,008,537 JBrowse link
G POP4 POP4 homolog, ribonuclease P/MRP subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:24,673,364...24,683,017
Ensembl chr 6:24,675,868...24,682,683 		JBrowse link
G POP5 POP5 homolog, ribonuclease P/MRP subunit involved_in IEA UniProt GO_REF:0000043 NCBI chr11:115,932,265...115,934,644
Ensembl chr11:115,932,394...115,934,562 		JBrowse link
G POP7 POP7 homolog, ribonuclease P/MRP subunit involved_in IEA UniProt GO_REF:0000043 NCBI chr28:12,501,363...12,502,766
Ensembl chr28:12,501,457...12,502,737 		JBrowse link
G PPAN peter pan homolog involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:9,174,978...9,180,121
Ensembl chr 6:9,174,990...9,179,990 		JBrowse link
G PWP1 PWP1 homolog, endonuclein involved_in IEA InterPro GO_REF:0000002 NCBI chr11:102,917,553...102,943,696
Ensembl chr11:102,917,606...102,942,481 		JBrowse link
G RBFA ribosome binding factor A involved_in IEA InterPro GO_REF:0000002 NCBI chr18:222,969...234,718
Ensembl chr18:223,214...234,696 		JBrowse link
G REXO4 REX4 homolog, 3'-5' exonuclease involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr12:4,718,728...4,732,138
Ensembl chr12:4,718,799...4,731,241 		JBrowse link
G RNASEL ribonuclease L ISO RGD PMID:8469023 RGD:2291995 NCBI chr25:46,779,221...46,795,854
Ensembl chr25:46,779,700...46,795,842 		JBrowse link
G RPF1 ribosome production factor 1 homolog involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr20:48,855,166...48,877,132 JBrowse link
G RPL11 ribosomal protein L11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:108,982,781...108,987,667
Ensembl chr20:108,981,723...108,987,734 		JBrowse link
G RPL14 ribosomal protein L14 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:1,949,789...1,954,518
Ensembl chr22:1,949,817...1,954,466 		JBrowse link
G RPL26 ribosomal protein L26 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:7,733,652...7,740,384
Ensembl chr16:7,732,921...7,740,325 		JBrowse link
G RPL27 ribosomal protein L27 involved_in ISO (PMID:25424902) UniProt PMID:25424902 NCBI chr16:63,287,493...63,292,054
Ensembl chr16:63,287,208...63,292,473 		JBrowse link
G RPL35A ribosomal protein L35a involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:91,666,800...91,672,138
Ensembl chr15:91,666,236...91,674,881 		JBrowse link
G RPL5 ribosomal protein L5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:40,416,553...40,427,027
Ensembl chr20:40,413,897...40,427,060 		JBrowse link
G RPL7 ribosomal protein L7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:68,899,626...68,902,757 JBrowse link
G RPS15 ribosomal protein S15 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:1,211,716...1,213,896
Ensembl chr 6:1,211,713...1,214,044 		JBrowse link
G RPS16 ribosomal protein S16 involved_in ISO (PMID:18697920) UniProt PMID:18697920 NCBI chr 6:34,039,470...34,042,278
Ensembl chr 6:34,039,251...34,042,313 		JBrowse link
G RPS17 ribosomal protein S17 involved_in ISO (PMID:18697920) UniProt PMID:18697920 NCBI chr29:3,109,426...3,113,538 JBrowse link
G RPS19 ribosomal protein S19 involved_in ISO (PMID:18697920) UniProt PMID:18697920 NCBI chr 6:36,067,959...36,085,581 JBrowse link
G RPS24 ribosomal protein S24 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:53,400,876...53,407,746
Ensembl chr 9:53,398,783...53,407,697 		JBrowse link
G RPS25 ribosomal protein S25 involved_in ISO (PMID:18697920) FlyBase PMID:18697920 NCBI chr 1:110,386,840...110,389,492 JBrowse link
G RPS27 ribosomal protein S27 involved_in ISO (PMID:25424902) UniProt PMID:25424902 NCBI chr20:9,821,812...9,823,267 JBrowse link
G RPS28 ribosomal protein S28 involved_in ISO (PMID:18697920) UniProt PMID:18697920 NCBI chr 6:7,684,720...7,685,597 JBrowse link
G RPS6 ribosomal protein S6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16357222), (PMID:17000767) Ensembl
MGI		 PMID:16357222 PMID:17000767 GO_REF:0000107 NCBI chr12:60,353,800...60,357,797
Ensembl chr12:60,353,817...60,357,759 		JBrowse link
G RPS7 ribosomal protein S7 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr14:104,069,825...104,075,669
Ensembl chr14:104,069,645...104,075,647 		JBrowse link
G RRP1 ribosomal RNA processing 1 involved_in IEA InterPro GO_REF:0000002 Ensembl chr 2:87,560,246...87,587,784 JBrowse link
G RRP15 ribosomal RNA processing 15 homolog involved_in IEA InterPro GO_REF:0000002 NCBI chr25:11,273,756...11,318,280
Ensembl chr25:11,274,241...11,318,290 		JBrowse link
G RRP1B ribosomal RNA processing 1B involved_in IEA InterPro GO_REF:0000002 NCBI chr 2:87,434,214...87,471,553
Ensembl chr 2:87,434,304...87,471,627 		JBrowse link
G RRP36 ribosomal RNA processing 36 involved_in IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000104 GO_REF:0000107 NCBI chr17:29,130,607...29,138,585
Ensembl chr17:29,130,981...29,138,395 		JBrowse link
G RRP7A ribosomal RNA processing 7 homolog A involved_in ISO (PMID:33199730) UniProt PMID:33199730
G RRP8 ribosomal RNA processing 8 involved_in IEA UniProt GO_REF:0000043 GO_REF:0000104 NCBI chr 1:58,221,861...58,225,470
Ensembl chr 1:58,221,869...58,225,329 		JBrowse link
G RRP9 ribosomal RNA processing 9, U3 small nucleolar RNA binding protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:13,301,525...13,310,132
Ensembl chr22:13,300,799...13,310,137 		JBrowse link
G SBDS SBDS ribosome maturation factor involved_in ISO (PMID:17643419) UniProt PMID:17643419 NCBI chr28:2,527,395...2,535,152
Ensembl chr28:2,527,020...2,535,147 		JBrowse link
G TBL3 transducin beta like 3 involved_in IEA InterPro GO_REF:0000002 NCBI chr 5:1,867,943...1,874,640
Ensembl chr 5:1,867,917...1,875,236 		JBrowse link
G TEX10 testis expressed 10 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:39,087,506...39,138,134
Ensembl chr12:39,091,085...39,138,027 		JBrowse link
G TFB1M transcription factor B1, mitochondrial involved_in IEA UniProt GO_REF:0000043 NCBI chr13:82,823,528...82,877,958
Ensembl chr13:82,823,640...82,877,923 		JBrowse link
G TFB2M transcription factor B2, mitochondrial involved_in IEA UniProt GO_REF:0000043 NCBI chr25:83,564,405...83,591,980
Ensembl chr25:83,564,432...83,591,930 		JBrowse link
G TSR2 TSR2 ribosome maturation factor involved_in IEA UniProt GO_REF:0000043 NCBI chr  X:50,532,958...50,555,179 JBrowse link
G TSR3 TSR3 ribosome maturation factor involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr 5:1,237,625...1,240,287
Ensembl chr 5:1,237,821...1,240,191 		JBrowse link
G UTP11 UTP11 small subunit processome component involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 GO_REF:0000104 NCBI chr20:94,845,537...94,858,198
Ensembl chr20:94,845,560...94,858,192 		JBrowse link
G UTP14A UTP14A small subunit processome component involved_in IEA InterPro GO_REF:0000002 NCBI chr  X:105,168,193...105,192,226
Ensembl chr  X:105,168,278...105,192,082 		JBrowse link
G UTP14C UTP14C small subunit processome component involved_in IEA InterPro GO_REF:0000002 NCBI chr 3:29,912,001...29,920,880
Ensembl chr 3:29,916,080...29,918,395 		JBrowse link
G UTP15 UTP15 small subunit processome component involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 4:67,928,440...67,942,820
Ensembl chr 4:67,929,900...67,943,970 		JBrowse link
G UTP18 UTP18 small subunit processome component involved_in IEA InterPro GO_REF:0000002 NCBI chr16:42,050,447...42,084,950
Ensembl chr16:42,050,172...42,085,603 		JBrowse link
G UTP20 UTP20 small subunit processome component involved_in ISO (PMID:17498821) UniProt PMID:17498821 NCBI chr11:96,549,046...96,657,494
Ensembl chr11:96,549,037...96,659,699 		JBrowse link
G UTP23 UTP23 small subunit processome component involved_in IEA UniProt GO_REF:0000043 NCBI chr 8:111,404,636...111,410,083
Ensembl chr 8:111,404,634...111,413,673 		JBrowse link
G UTP25 UTP25 small subunit processome component involved_in IEA InterPro GO_REF:0000002 NCBI chr25:19,601,165...19,625,274
Ensembl chr25:19,600,266...19,625,229 		JBrowse link
G WDR12 WD repeat domain 12 involved_in IEA UniProt GO_REF:0000043 NCBI chr10:88,616,540...88,649,743
Ensembl chr10:88,616,797...88,649,418 		JBrowse link
G WDR18 WD repeat domain 18 involved_in IEA UniProt
TreeGrafter		 GO_REF:0000043 GO_REF:0000104 GO_REF:0000118 NCBI chr 6:740,712...750,797
Ensembl chr 6:740,729...754,592 		JBrowse link
G WDR36 WD repeat domain 36 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr23:14,427,459...14,464,125
Ensembl chr23:14,427,487...14,466,704 		JBrowse link
G WDR55 WD repeat domain 55 involved_in IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000104 GO_REF:0000107 NCBI chr23:43,298,165...43,304,644
Ensembl chr23:43,297,967...43,303,355 		JBrowse link
G WDR74 WD repeat domain 74 involved_in ISO (PMID:29107693) UniProt PMID:29107693 NCBI chr 1:11,063,294...11,070,215
Ensembl chr 1:11,063,265...11,070,218 		JBrowse link
G WDR75 WD repeat domain 75 involved_in IEA UniProt GO_REF:0000043 NCBI chr10:74,953,086...74,989,662
Ensembl chr10:74,953,072...74,991,458 		JBrowse link
G YBEY ybeY metalloendoribonuclease involved_in IEA InterPro GO_REF:0000002 NCBI chr 2:89,905,119...89,910,307
Ensembl chr 2:89,905,127...89,909,324 		JBrowse link
rRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DKC1 dyskerin pseudouridine synthase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15240872)
(PMID:23726835)		 Ensembl
MGI
TreeGrafter		 PMID:15240872 PMID:23726835 GO_REF:0000107 GO_REF:0000118 NCBI chr  X:129,015,883...129,029,741
Ensembl chr  X:129,016,046...129,030,001 		JBrowse link
G NHP2 NHP2 ribonucleoprotein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr23:79,842,690...79,847,138
Ensembl chr23:79,842,948...79,846,984 		JBrowse link
G NOP10 NOP10 ribonucleoprotein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:48,563,535...48,566,409
Ensembl chr26:48,563,517...48,566,745 		JBrowse link
small-subunit processome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABT1 activator of basal transcription 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:45,617,425...45,619,634
Ensembl chr17:45,616,617...45,619,681 		JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:43,915,226...44,119,547
Ensembl chr 8:43,914,636...44,119,541 		JBrowse link
G XRCC5 X-ray repair cross complementing 5 involved_in ISO (PMID:32103174) UniProt PMID:32103174 NCBI chr10:101,952,909...102,051,059
Ensembl chr10:101,953,067...102,049,964 		JBrowse link
snoRNA guided rRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DKC1 dyskerin pseudouridine synthase 1 ISO RGD PMID:12446766 RGD:633420 NCBI chr  X:129,015,883...129,029,741
Ensembl chr  X:129,016,046...129,030,001 		JBrowse link
G GAR1 GAR1 ribonucleoprotein involved_in ISO
IEA		 RGD
TreeGrafter		 PMID:12446766 GO_REF:0000118 RGD:633420 NCBI chr 7:57,713,245...57,722,831
Ensembl chr 7:57,713,881...57,722,224 		JBrowse link
G NHP2 NHP2 ribonucleoprotein ISO RGD PMID:12446766 RGD:633420 NCBI chr23:79,842,690...79,847,138
Ensembl chr23:79,842,948...79,846,984 		JBrowse link
G NOP10 NOP10 ribonucleoprotein ISO RGD PMID:12446766 RGD:633420 NCBI chr26:48,563,535...48,566,409
Ensembl chr26:48,563,517...48,566,745 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16925
    cellular process 15887
      cellular component organization or biogenesis 6765
        cellular component biogenesis 3357
          ribonucleoprotein complex biogenesis 465
            ribosome biogenesis 336
              negative regulation of ribosome biogenesis + 5
              positive regulation of ribosome biogenesis 1
              rRNA processing + 225
              regulation of ribosome biogenesis + 7
              ribosomal large subunit biogenesis + 85
              ribosomal small subunit biogenesis + 123
              ribosomal subunit export from nucleus + 16
              ribosome assembly + 56
paths to the root